Variant report

Variant	rs4713528
Chromosome Location	chr6:11462507-11462508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1879826	0.81[AFR][1000 genomes]
rs6907085	0.85[AFR][1000 genomes]
rs6924008	0.83[AFR][1000 genomes]
rs7738686	0.85[AFR][1000 genomes]
rs9368718	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11459200-11462800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:11459200-11465600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:11459800-11463800	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr6:11460600-11466800	Weak transcription	Stomach Mucosa	stomach
5	chr6:11460800-11462600	Weak transcription	Placenta	Placenta
6	chr6:11460800-11462800	Weak transcription	Lung	lung
7	chr6:11461000-11463600	Enhancers	Primary B cells from peripheral blood	blood
8	chr6:11461200-11462800	Weak transcription	Adipose Nuclei	Adipose
9	chr6:11461600-11463200	Enhancers	Primary B cells from cord blood	blood
10	chr6:11461600-11464600	Enhancers	HepG2	liver
11	chr6:11461800-11462800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr6:11461800-11462800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:11461800-11462800	Weak transcription	Fetal Thymus	thymus
14	chr6:11461800-11463000	Weak transcription	Thymus	Thymus
15	chr6:11462000-11463400	Enhancers	GM12878-XiMat	blood
16	chr6:11462200-11464200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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