Variant report

Variant	rs6907085
Chromosome Location	chr6:11465030-11465031
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10947267	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1879826	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2327438	0.86[AFR][1000 genomes]
rs4713528	0.85[AFR][1000 genomes]
rs4713532	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713563	0.87[EUR][1000 genomes]
rs6924008	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7738686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9366791	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9368698	0.87[EUR][1000 genomes]
rs9368718	0.84[ASN][1000 genomes]
rs9368722	1.00[ASN][1000 genomes]
rs9380280	0.87[EUR][1000 genomes]
rs9394068	0.87[EUR][1000 genomes]
rs9461772	0.87[EUR][1000 genomes]
rs9461788	0.87[EUR][1000 genomes]
rs9469100	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11459200-11465600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:11460600-11466800	Weak transcription	Stomach Mucosa	stomach
3	chr6:11463200-11466600	Weak transcription	Primary B cells from cord blood	blood
4	chr6:11463600-11465400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr6:11464000-11468400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:11464200-11465600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr6:11465000-11465800	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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