Variant report

Variant	rs9394068
Chromosome Location	chr6:11362283-11362284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11357820..11359375-chr6:11361322..11362999,2	MCF-7	breast:
2	chr6:11361742..11363799-chr6:11390474..11392011,2	MCF-7	breast:
3	chr6:11339887..11342299-chr6:11361648..11364583,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1879826	0.87[EUR][1000 genomes]
rs4713532	0.87[EUR][1000 genomes]
rs4713563	1.00[EUR][1000 genomes]
rs6907085	0.87[EUR][1000 genomes]
rs6924008	0.87[EUR][1000 genomes]
rs7738686	0.87[EUR][1000 genomes]
rs9366791	1.00[EUR][1000 genomes]
rs9368698	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9380280	1.00[EUR][1000 genomes]
rs9461772	1.00[EUR][1000 genomes]
rs9461788	1.00[EUR][1000 genomes]
rs9469100	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11355000-11364000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:11355000-11367400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:11355200-11365200	Weak transcription	Left Ventricle	heart
4	chr6:11355200-11370800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:11357200-11362800	Enhancers	HepG2	liver
6	chr6:11357200-11371200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:11357600-11362600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:11357600-11364200	Weak transcription	Right Atrium	heart
9	chr6:11357600-11365600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr6:11357600-11367600	Weak transcription	Aorta	Aorta
11	chr6:11357800-11364600	Weak transcription	HUVEC	blood vessel
12	chr6:11357800-11365200	Weak transcription	Lung	lung
13	chr6:11357800-11366600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr6:11357800-11370400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:11358000-11364400	Weak transcription	Spleen	Spleen
16	chr6:11358000-11367800	Weak transcription	Small Intestine	intestine
17	chr6:11358200-11367400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:11358800-11366400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr6:11358800-11367000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr6:11359400-11369800	Weak transcription	Brain Hippocampus Middle	brain
21	chr6:11359600-11364200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr6:11359600-11366400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:11359800-11364000	ZNF genes & repeats	GM12878-XiMat	blood
24	chr6:11360000-11363600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:11360000-11364200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:11360000-11364200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr6:11360000-11366400	Weak transcription	Esophagus	oesophagus
28	chr6:11360200-11362800	Weak transcription	HMEC	breast
29	chr6:11360200-11363600	Weak transcription	NHEK	skin
30	chr6:11360200-11366800	Weak transcription	Duodenum Mucosa	Duodenum
31	chr6:11360400-11364200	Weak transcription	Placenta	Placenta
32	chr6:11360600-11362800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr6:11360600-11364400	Weak transcription	Fetal Thymus	thymus
34	chr6:11360600-11364800	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr6:11360800-11362400	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr6:11360800-11364200	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr6:11360800-11364400	Strong transcription	Primary B cells from peripheral blood	blood
38	chr6:11360800-11364600	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr6:11361000-11366400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr6:11361200-11364200	Weak transcription	Stomach Mucosa	stomach
41	chr6:11361200-11364400	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr6:11361200-11365800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
43	chr6:11361200-11366800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr6:11361200-11370600	Weak transcription	Thymus	Thymus
45	chr6:11361400-11364800	Weak transcription	Primary hematopoietic stem cells	blood
46	chr6:11361400-11365000	Strong transcription	Primary B cells from cord blood	blood
47	chr6:11361600-11367200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr6:11362000-11362400	Strong transcription	Primary T cells from cord blood	blood
49	chr6:11362000-11363400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr6:11362200-11362400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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