Variant report

Variant	rs9368698
Chromosome Location	chr6:11406416-11406417
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1879826	0.87[EUR][1000 genomes]
rs4713532	0.87[EUR][1000 genomes]
rs4713563	1.00[EUR][1000 genomes]
rs6907085	0.87[EUR][1000 genomes]
rs6924008	0.87[EUR][1000 genomes]
rs7738686	0.87[EUR][1000 genomes]
rs9366791	1.00[EUR][1000 genomes]
rs9380280	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9394068	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9461772	1.00[EUR][1000 genomes]
rs9461788	1.00[EUR][1000 genomes]
rs9469100	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11399000-11410800	Weak transcription	Adipose Nuclei	Adipose
2	chr6:11402800-11406800	Enhancers	Primary B cells from peripheral blood	blood
3	chr6:11403200-11406600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:11403600-11406600	Enhancers	Primary B cells from cord blood	blood
5	chr6:11403600-11406600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:11403600-11406800	Enhancers	Primary hematopoietic stem cells	blood
7	chr6:11403800-11407000	Weak transcription	Lung	lung
8	chr6:11404800-11406600	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr6:11404800-11406800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:11405200-11412400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:11405400-11412000	Weak transcription	Fetal Kidney	kidney
12	chr6:11405400-11419400	Weak transcription	Aorta	Aorta
13	chr6:11405600-11410800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:11405800-11406800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:11405800-11409800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr6:11405800-11411000	Weak transcription	GM12878-XiMat	blood
17	chr6:11405800-11412400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:11406000-11412400	Weak transcription	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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