Variant report

Variant	rs9366791
Chromosome Location	chr6:11445137-11445138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1879826	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4713532	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4713563	1.00[EUR][1000 genomes]
rs6907085	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6924008	0.87[EUR][1000 genomes]
rs7738686	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9368698	1.00[EUR][1000 genomes]
rs9368722	0.82[ASN][1000 genomes]
rs9380280	1.00[EUR][1000 genomes]
rs9394068	1.00[EUR][1000 genomes]
rs9461772	1.00[EUR][1000 genomes]
rs9461788	1.00[EUR][1000 genomes]
rs9469100	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv3328816	chr6:11443666-11445664	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11442800-11446000	Enhancers	Primary B cells from cord blood	blood
2	chr6:11443800-11449200	Weak transcription	HepG2	liver
3	chr6:11444600-11446000	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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