Variant report

Variant	rs4713679
Chromosome Location	chr6:33742403-33742404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33733565..33735382-chr6:33741109..33742921,2	K562	blood:
2	chr6:33736395..33737905-chr6:33740079..33742724,2	K562	blood:
3	chr6:33677854..33679623-chr6:33741154..33743087,2	MCF-7	breast:
4	chr6:33738877..33740467-chr6:33741508..33744175,2	K562	blood:

Variant related genes	Relation type
ENSG00000137288	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12190029	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1359781	0.81[AFR][1000 genomes]
rs2296744	0.87[EUR][1000 genomes]
rs2296746	0.83[AFR][1000 genomes]
rs2296748	0.83[AFR][1000 genomes]
rs2395402	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4711347	0.83[EUR][1000 genomes]
rs4711348	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4711349	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4711355	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4713682	0.80[AFR][1000 genomes]
rs6457741	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6922275	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6929696	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs747694	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7774620	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9357164	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9394166	0.83[AFR][1000 genomes]
rs9394167	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs943471	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs943474	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs943475	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs943478	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs943479	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv462897	chr6:33717770-33778964	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv602839	chr6:33717770-33778964	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv462898	chr6:33723383-33768897	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv602840	chr6:33723383-33768897	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33736800-33743400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:33737800-33742600	Weak transcription	Hela-S3	cervix
3	chr6:33738600-33753200	Strong transcription	Thymus	Thymus
4	chr6:33739000-33746000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:33739600-33752600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:33739600-33754000	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr6:33739800-33742600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:33739800-33752400	Strong transcription	Primary T helper cells PMA-I stimulated	--
9	chr6:33739800-33752600	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:33739800-33753000	Strong transcription	Primary B cells from peripheral blood	blood
11	chr6:33739800-33753000	Strong transcription	Primary T cells from cord blood	blood
12	chr6:33739800-33753000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr6:33739800-33753600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:33740000-33746000	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:33740000-33749000	Strong transcription	Brain Anterior Caudate	brain
16	chr6:33740000-33752400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr6:33740000-33752600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr6:33740000-33752600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:33740000-33752800	Strong transcription	Dnd41	blood
20	chr6:33740000-33753000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:33740000-33753000	Strong transcription	HepG2	liver
22	chr6:33740000-33753200	Strong transcription	Primary hematopoietic stem cells	blood
23	chr6:33740000-33753600	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr6:33740000-33753600	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr6:33740200-33742600	Weak transcription	Psoas Muscle	Psoas
26	chr6:33740200-33743600	Strong transcription	Brain Cingulate Gyrus	brain
27	chr6:33740200-33743800	Strong transcription	Brain Substantia Nigra	brain
28	chr6:33740200-33744600	Strong transcription	H9 Cell Line	embryonic stem cell
29	chr6:33740200-33745800	Strong transcription	Brain Germinal Matrix	brain
30	chr6:33740200-33746600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr6:33740200-33747800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:33740200-33748400	Weak transcription	Fetal Heart	heart
33	chr6:33740200-33748600	Weak transcription	Right Atrium	heart
34	chr6:33740200-33748800	Strong transcription	Osteobl	bone
35	chr6:33740200-33749200	Strong transcription	Gastric	stomach
36	chr6:33740200-33749400	Strong transcription	Lung	lung
37	chr6:33740200-33750000	Strong transcription	Pancreas	Pancrea
38	chr6:33740200-33751600	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr6:33740200-33751800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr6:33740200-33752400	Strong transcription	Rectal Smooth Muscle	rectum
41	chr6:33740200-33752600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
42	chr6:33740200-33753000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr6:33740200-33753400	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr6:33740200-33754000	Strong transcription	Primary B cells from cord blood	blood
45	chr6:33740400-33743200	Weak transcription	K562	blood
46	chr6:33740400-33743800	Strong transcription	Brain Inferior Temporal Lobe	brain
47	chr6:33740400-33744000	Strong transcription	Brain Angular Gyrus	brain
48	chr6:33740400-33745800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr6:33740400-33747200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:33740400-33747800	Strong transcription	Primary T cells fromperipheralblood	blood

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