Variant report

Variant	rs4713714
Chromosome Location	chr6:33865380-33865381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr6:33865290-33865495	HepG2	liver:	n/a	chr6:33865353-33865368 chr6:33865353-33865364 chr6:33865354-33865365 chr6:33865352-33865366 chr6:33865353-33865364
2	MAFK	chr6:33865231-33865494	HepG2	liver:	n/a	chr6:33865353-33865368 chr6:33865353-33865364 chr6:33865354-33865365 chr6:33865352-33865366 chr6:33865353-33865364
3	POLR2A	chr6:33865362-33865665	MCF-7	breast:	n/a	n/a
4	MAFF	chr6:33865285-33865453	HepG2	liver:	n/a	chr6:33865351-33865369

No.	Distal block	Cell Line	Cell type
1	chr6:33865205..33866951-chr6:33868393..33870206,2	MCF-7	breast:
2	chr6:33864193..33866303-chr6:33876209..33879014,2	MCF-7	breast:
3	chr6:33858737..33862272-chr6:33862763..33866214,4	MCF-7	breast:
4	chr6:33864701..33867431-chr6:33868454..33870776,4	K562	blood:
5	chr6:33863866..33866857-chr6:33868075..33870353,3	MCF-7	breast:
6	chr6:33865276..33866943-chr6:33949912..33952206,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233183	TF binding region
LINC01016	TF binding region
ENSG00000249346	Chromatin interaction
ENSG00000233183	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9368782	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33850000-33871800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:33862400-33867000	Weak transcription	Spleen	Spleen
3	chr6:33862600-33865600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr6:33862800-33865600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:33862800-33865600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr6:33862800-33866000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr6:33862800-33866200	Enhancers	Fetal Thymus	thymus
8	chr6:33863000-33865400	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr6:33863000-33865600	Enhancers	Primary T cells from cord blood	blood
10	chr6:33863000-33865600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr6:33863000-33865600	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr6:33863200-33865800	Enhancers	Fetal Stomach	stomach
13	chr6:33863400-33865800	Enhancers	Fetal Intestine Large	intestine
14	chr6:33863800-33865400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:33863800-33865400	Enhancers	Small Intestine	intestine
16	chr6:33863800-33865600	Enhancers	Duodenum Mucosa	Duodenum
17	chr6:33863800-33866400	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr6:33864000-33865800	Enhancers	Fetal Lung	lung
19	chr6:33864000-33870800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:33864200-33865600	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr6:33864400-33865400	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr6:33864400-33865400	Enhancers	A549	lung
23	chr6:33864400-33865600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:33864400-33865600	Enhancers	Rectal Smooth Muscle	rectum
25	chr6:33864400-33866000	Enhancers	Pancreas	Pancrea
26	chr6:33864600-33865600	Enhancers	Esophagus	oesophagus
27	chr6:33864800-33865400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:33864800-33865400	Bivalent Enhancer	HepG2	liver
29	chr6:33864800-33865600	Enhancers	Primary T cells fromperipheralblood	blood
30	chr6:33864800-33865600	Enhancers	Stomach Smooth Muscle	stomach
31	chr6:33864800-33865600	Enhancers	Thymus	Thymus
32	chr6:33864800-33866000	Enhancers	Fetal Intestine Small	intestine
33	chr6:33864800-33869600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr6:33865000-33865400	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr6:33865000-33865600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
36	chr6:33865000-33865600	Enhancers	Placenta	Placenta
37	chr6:33865000-33865600	Enhancers	Rectal Mucosa Donor 29	rectum
38	chr6:33865000-33871200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr6:33865200-33865600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:33865200-33868200	Weak transcription	Primary hematopoietic stem cells	blood
41	chr6:33865200-33868800	Weak transcription	K562	blood

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