Variant report

Variant	rs9368782
Chromosome Location	chr6:33872616-33872617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33863721..33865623-chr6:33871350..33873193,3	K562	blood:
2	chr6:33871240..33875960-chr6:33876004..33878253,4	K562	blood:
3	chr6:33863052..33865813-chr6:33870777..33873506,3	MCF-7	breast:
4	chr6:33867717..33870484-chr6:33872080..33874838,5	MCF-7	breast:
5	chr6:33871826..33874776-chr6:33875956..33877869,2	MCF-7	breast:
6	chr6:33872397..33874588-chr6:33952350..33955132,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249346	Chromatin interaction
ENSG00000233183	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11969392	0.91[CEU][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes]
rs12174422	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs1969842	0.92[EUR][1000 genomes]
rs4713714	0.89[CHB][hapmap]
rs55952938	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56141332	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62399311	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33865600-33883000	Weak transcription	Esophagus	oesophagus
2	chr6:33868200-33877800	Enhancers	Primary hematopoietic stem cells	blood
3	chr6:33869600-33873400	Flanking Active TSS	K562	blood
4	chr6:33870800-33875200	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:33870800-33876600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:33871200-33873200	Enhancers	Primary B cells from cord blood	blood
7	chr6:33871400-33873600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
8	chr6:33871400-33875400	Enhancers	Thymus	Thymus
9	chr6:33871600-33872800	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr6:33871600-33873000	Flanking Active TSS	Fetal Thymus	thymus
11	chr6:33871600-33873200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:33871600-33873200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:33871600-33873400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
14	chr6:33871600-33873400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr6:33871600-33873600	Enhancers	Fetal Intestine Large	intestine
16	chr6:33871600-33874000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:33871600-33874000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:33871600-33874600	Enhancers	GM12878-XiMat	blood
19	chr6:33871600-33876400	Enhancers	Fetal Intestine Small	intestine
20	chr6:33871800-33872800	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr6:33871800-33872800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:33871800-33873000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:33871800-33873200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr6:33871800-33873400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:33871800-33873400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
26	chr6:33871800-33873400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
27	chr6:33871800-33873600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:33871800-33873600	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr6:33871800-33873600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr6:33871800-33873800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:33871800-33873800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
32	chr6:33871800-33875600	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr6:33872000-33873200	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr6:33872000-33873200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
35	chr6:33872200-33872800	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr6:33872200-33872800	Bivalent Enhancer	Fetal Muscle Leg	muscle
37	chr6:33872200-33873000	Enhancers	Brain Anterior Caudate	brain
38	chr6:33872200-33873000	Enhancers	Colon Smooth Muscle	Colon
39	chr6:33872200-33873000	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr6:33872200-33873200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
41	chr6:33872200-33873800	Enhancers	Spleen	Spleen
42	chr6:33872200-33874400	Flanking Active TSS	Liver	Liver
43	chr6:33872400-33872800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr6:33872400-33872800	Enhancers	Rectal Smooth Muscle	rectum
45	chr6:33872400-33872800	Enhancers	Stomach Smooth Muscle	stomach
46	chr6:33872400-33873400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
47	chr6:33872400-33874200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr6:33872400-33874800	Weak transcription	Pancreas	Pancrea
49	chr6:33872600-33872800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
50	chr6:33872600-33872800	Enhancers	Fetal Kidney	kidney

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