Variant report

Variant	rs4713875
Chromosome Location	chr6:35469322-35469323
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12110645	0.89[ASN][1000 genomes]
rs2273002	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3807048	0.86[ASN][1000 genomes]
rs4711418	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711419	0.89[ASN][1000 genomes]
rs4711421	0.86[ASN][1000 genomes]
rs4711422	0.86[ASN][1000 genomes]
rs4713877	0.89[ASN][1000 genomes]
rs4713878	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4713880	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4713883	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4713889	0.86[ASN][1000 genomes]
rs6903200	0.89[ASN][1000 genomes]
rs73746446	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
2	nsv984463	chr6:35432948-35477634	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	67 gene(s)	inside rSNPs	diseases
3	nsv462909	chr6:35457396-35502202	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
4	nsv602912	chr6:35457396-35502202	Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
5	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	esv1820663	chr6:35464197-35471362	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
8	esv2233598	chr6:35469148-35469557	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
9	esv3424449	chr6:35469304-35469406	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
10	esv3327254	chr6:35469314-35469404	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35466400-35476800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:35466400-35479200	Weak transcription	Right Ventricle	heart
3	chr6:35466800-35477000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:35466800-35479400	Weak transcription	Right Atrium	heart
5	chr6:35467000-35473400	Weak transcription	Esophagus	oesophagus
6	chr6:35467200-35469400	Enhancers	Placenta	Placenta
7	chr6:35467400-35478600	Weak transcription	Fetal Lung	lung
8	chr6:35467600-35471600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:35468400-35469800	Bivalent Enhancer	HepG2	liver
10	chr6:35468600-35471200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:35468600-35471200	Enhancers	Fetal Muscle Leg	muscle
12	chr6:35468800-35473000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr6:35469000-35473200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:35469000-35473600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:35469200-35469400	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr6:35469200-35469600	Weak transcription	Fetal Stomach	stomach
17	chr6:35469200-35469800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:35469200-35471200	Weak transcription	Psoas Muscle	Psoas
19	chr6:35469200-35471200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr6:35469200-35471200	Weak transcription	HSMMtube	muscle
21	chr6:35469200-35471400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:35469200-35473400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:35469200-35473600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:35469200-35473600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:35469200-35473600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr6:35469200-35473800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:35469200-35474200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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