Variant report

Variant	rs73746446
Chromosome Location	chr6:35479115-35479116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35476971..35479724-chr6:35699932..35701695,3	MCF-7	breast:
2	chr6:35474441..35476713-chr6:35477709..35479563,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12110645	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2273002	0.93[ASN][1000 genomes]
rs3807048	0.83[ASN][1000 genomes]
rs4711418	0.89[ASN][1000 genomes]
rs4711419	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711421	0.83[ASN][1000 genomes]
rs4711422	0.83[ASN][1000 genomes]
rs4713875	0.89[ASN][1000 genomes]
rs4713877	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713878	0.93[ASN][1000 genomes]
rs4713880	0.93[ASN][1000 genomes]
rs4713883	0.89[ASN][1000 genomes]
rs4713889	0.83[ASN][1000 genomes]
rs56093109	1.00[EUR][1000 genomes]
rs57012493	0.96[EUR][1000 genomes]
rs58883868	0.96[EUR][1000 genomes]
rs59000522	0.96[EUR][1000 genomes]
rs6903200	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755718	1.00[EUR][1000 genomes]
rs7768163	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
2	nsv462909	chr6:35457396-35502202	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
3	nsv602912	chr6:35457396-35502202	Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
4	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	esv2761067	chr6:35471246-35573245	Weak transcription Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv1022435	chr6:35476562-35556141	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv1034786	chr6:35476562-35564799	Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv1031987	chr6:35476562-35579375	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	esv3421979	chr6:35478924-35481222	Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35466400-35479200	Weak transcription	Right Ventricle	heart
2	chr6:35466800-35479400	Weak transcription	Right Atrium	heart
3	chr6:35473400-35479400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:35477400-35480200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:35477800-35479200	Bivalent Enhancer	Fetal Muscle Leg	muscle
6	chr6:35478200-35479400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
7	chr6:35478400-35479400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:35478400-35479800	Enhancers	Fetal Heart	heart
9	chr6:35478400-35480000	Weak transcription	Spleen	Spleen
10	chr6:35478600-35479200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:35478600-35479200	Bivalent Enhancer	Fetal Stomach	stomach
12	chr6:35478600-35479400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr6:35478600-35479600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr6:35478600-35480800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:35478800-35479200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr6:35478800-35479400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr6:35478800-35479400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:35478800-35479400	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:35478800-35479600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:35478800-35480200	Enhancers	Placenta Amnion	Placenta Amnion
21	chr6:35478800-35480400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
22	chr6:35478800-35480800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:35479000-35479200	Enhancers	H9 Cell Line	embryonic stem cell
24	chr6:35479000-35479200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
25	chr6:35479000-35479200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
26	chr6:35479000-35479200	Bivalent Enhancer	Colon Smooth Muscle	Colon
27	chr6:35479000-35479200	Flanking Active TSS	Fetal Kidney	kidney
28	chr6:35479000-35479200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
29	chr6:35479000-35479200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
30	chr6:35479000-35479400	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
31	chr6:35479000-35479400	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr6:35479000-35479400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
33	chr6:35479000-35479400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
34	chr6:35479000-35479400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:35479000-35479400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:35479000-35479400	Bivalent Enhancer	Colonic Mucosa	Colon
37	chr6:35479000-35479400	Bivalent Enhancer	Fetal Intestine Large	intestine
38	chr6:35479000-35479400	Flanking Active TSS	Fetal Lung	lung
39	chr6:35479000-35479400	Enhancers	Ovary	ovary
40	chr6:35479000-35479600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
41	chr6:35479000-35479600	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr6:35479000-35479800	Flanking Active TSS	Primary hematopoietic stem cells	blood
43	chr6:35479000-35479800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle

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