Variant report

Variant	rs7768163
Chromosome Location	chr6:35492740-35492741
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35491117..35492818-chr6:35656299..35657951,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000096060	Chromatin interaction

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10947553	1.00[ASN][1000 genomes]
rs11962571	1.00[ASN][1000 genomes]
rs11963387	1.00[ASN][1000 genomes]
rs11963864	1.00[ASN][1000 genomes]
rs11965291	1.00[ASN][1000 genomes]
rs11966198	1.00[ASN][1000 genomes]
rs11966959	1.00[ASN][1000 genomes]
rs12110366	1.00[ASN][1000 genomes]
rs12110645	1.00[EUR][1000 genomes]
rs16878591	1.00[ASN][1000 genomes]
rs16878806	1.00[ASN][1000 genomes]
rs16879318	1.00[ASN][1000 genomes]
rs16879378	1.00[ASN][1000 genomes]
rs2395620	1.00[ASN][1000 genomes]
rs28675670	1.00[ASN][1000 genomes]
rs34866878	1.00[ASN][1000 genomes]
rs41270080	1.00[ASN][1000 genomes]
rs45484291	1.00[ASN][1000 genomes]
rs45492197	1.00[ASN][1000 genomes]
rs45532932	1.00[ASN][1000 genomes]
rs45586932	1.00[ASN][1000 genomes]
rs45614138	1.00[ASN][1000 genomes]
rs4711419	0.96[EUR][1000 genomes]
rs4713877	1.00[EUR][1000 genomes]
rs56002954	1.00[ASN][1000 genomes]
rs56093109	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57012493	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57599664	1.00[ASN][1000 genomes]
rs57634040	1.00[ASN][1000 genomes]
rs58580399	1.00[ASN][1000 genomes]
rs58873316	1.00[ASN][1000 genomes]
rs58883868	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59000522	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59317948	0.89[AFR][1000 genomes]
rs59320339	1.00[ASN][1000 genomes]
rs59374947	0.85[AFR][1000 genomes]
rs59595954	1.00[ASN][1000 genomes]
rs60156710	1.00[ASN][1000 genomes]
rs61024208	1.00[ASN][1000 genomes]
rs61188051	1.00[ASN][1000 genomes]
rs61734569	1.00[ASN][1000 genomes]
rs6902870	1.00[ASN][1000 genomes]
rs6903096	1.00[ASN][1000 genomes]
rs6903200	1.00[EUR][1000 genomes]
rs6905853	0.85[AFR][1000 genomes]
rs6906596	0.82[AFR][1000 genomes]
rs6913026	1.00[ASN][1000 genomes]
rs6925456	1.00[ASN][1000 genomes]
rs6936165	1.00[ASN][1000 genomes]
rs6937483	1.00[ASN][1000 genomes]
rs6940708	1.00[ASN][1000 genomes]
rs6940722	1.00[ASN][1000 genomes]
rs6941244	1.00[ASN][1000 genomes]
rs73413737	1.00[ASN][1000 genomes]
rs73729766	1.00[ASN][1000 genomes]
rs73746446	1.00[EUR][1000 genomes]
rs73746465	1.00[ASN][1000 genomes]
rs73746467	1.00[ASN][1000 genomes]
rs73746471	1.00[ASN][1000 genomes]
rs73746473	1.00[ASN][1000 genomes]
rs73746478	1.00[ASN][1000 genomes]
rs73746481	1.00[ASN][1000 genomes]
rs73746488	1.00[ASN][1000 genomes]
rs73746490	1.00[ASN][1000 genomes]
rs73746491	1.00[ASN][1000 genomes]
rs73746493	1.00[ASN][1000 genomes]
rs73746494	1.00[ASN][1000 genomes]
rs73746495	1.00[ASN][1000 genomes]
rs73746498	1.00[ASN][1000 genomes]
rs73746499	1.00[ASN][1000 genomes]
rs73748203	1.00[ASN][1000 genomes]
rs73748204	1.00[ASN][1000 genomes]
rs73748205	1.00[ASN][1000 genomes]
rs73748206	1.00[ASN][1000 genomes]
rs73748209	1.00[ASN][1000 genomes]
rs73748211	1.00[ASN][1000 genomes]
rs7743425	1.00[ASN][1000 genomes]
rs7745039	1.00[ASN][1000 genomes]
rs7747121	1.00[ASN][1000 genomes]
rs7754530	1.00[ASN][1000 genomes]
rs7755021	1.00[ASN][1000 genomes]
rs7755718	0.95[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7757196	1.00[ASN][1000 genomes]
rs7758125	1.00[ASN][1000 genomes]
rs7766007	1.00[ASN][1000 genomes]
rs7768741	1.00[ASN][1000 genomes]
rs7771222	1.00[ASN][1000 genomes]
rs7771722	1.00[ASN][1000 genomes]
rs9462080	1.00[ASN][1000 genomes]
rs9470018	1.00[ASN][1000 genomes]
rs9658060	1.00[ASN][1000 genomes]
rs9658118	1.00[ASN][1000 genomes]
rs9658126	1.00[ASN][1000 genomes]
rs9658136	1.00[ASN][1000 genomes]
rs9658141	1.00[ASN][1000 genomes]
rs9767565	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
2	nsv462909	chr6:35457396-35502202	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
3	nsv602912	chr6:35457396-35502202	Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
4	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	esv2761067	chr6:35471246-35573245	Weak transcription Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv1022435	chr6:35476562-35556141	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv1034786	chr6:35476562-35564799	Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv1031987	chr6:35476562-35579375	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	nsv1028302	chr6:35480914-35542591	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
11	nsv538197	chr6:35480914-35542591	Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
12	nsv1024680	chr6:35480914-35555596	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
13	nsv538198	chr6:35480914-35555596	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
14	nsv1032973	chr6:35481880-35564799	Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35491000-35502000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:35491000-35502200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:35491800-35497200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr6:35491800-35497200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:35491800-35497200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:35491800-35501400	Weak transcription	Thymus	Thymus
7	chr6:35492400-35496800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:35492600-35492800	Enhancers	Placenta	Placenta

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