Variant report

Variant	rs58873316
Chromosome Location	chr6:35606401-35606402
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35606015..35609857-chr6:35612357..35615578,3	K562	blood:
2	chr6:35605088..35607255-chr6:35609543..35611672,2	K562	blood:
3	chr6:35605150..35607855-chr6:35700616..35702117,2	K562	blood:

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10947553	1.00[ASN][1000 genomes]
rs11961458	0.93[EUR][1000 genomes]
rs11961482	0.93[EUR][1000 genomes]
rs11962885	0.93[EUR][1000 genomes]
rs11963387	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11963864	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965291	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966198	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966436	0.93[EUR][1000 genomes]
rs12110366	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13340463	0.93[EUR][1000 genomes]
rs1475774	0.93[EUR][1000 genomes]
rs16878591	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16878806	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879318	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879378	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2092427	0.93[EUR][1000 genomes]
rs28675670	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34866878	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41270080	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45484291	1.00[ASN][1000 genomes]
rs45492197	1.00[ASN][1000 genomes]
rs45532932	1.00[ASN][1000 genomes]
rs45586932	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45614138	1.00[ASN][1000 genomes]
rs4713908	0.93[EUR][1000 genomes]
rs55832955	0.93[EUR][1000 genomes]
rs56002954	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56093109	1.00[ASN][1000 genomes]
rs56216330	1.00[EUR][1000 genomes]
rs57364044	1.00[ASN][1000 genomes]
rs57599664	1.00[ASN][1000 genomes]
rs57634040	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58580399	1.00[ASN][1000 genomes]
rs59320339	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59595954	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60156710	1.00[ASN][1000 genomes]
rs60279048	0.93[EUR][1000 genomes]
rs60352056	0.93[EUR][1000 genomes]
rs60645405	0.93[EUR][1000 genomes]
rs61024208	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61188051	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61731466	1.00[ASN][1000 genomes]
rs61734569	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457849	1.00[ASN][1000 genomes]
rs6909690	0.93[EUR][1000 genomes]
rs6910435	0.87[EUR][1000 genomes]
rs6917735	0.93[EUR][1000 genomes]
rs6917895	0.93[EUR][1000 genomes]
rs6917988	0.93[EUR][1000 genomes]
rs6925456	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932821	0.93[EUR][1000 genomes]
rs6932968	0.93[EUR][1000 genomes]
rs6933159	0.93[EUR][1000 genomes]
rs6936165	1.00[ASN][1000 genomes]
rs6941244	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421726	1.00[ASN][1000 genomes]
rs73729766	1.00[ASN][1000 genomes]
rs73746465	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73746467	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73746471	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73746473	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73746475	0.93[EUR][1000 genomes]
rs73746476	0.93[EUR][1000 genomes]
rs73746477	0.93[EUR][1000 genomes]
rs73746478	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73746480	0.93[EUR][1000 genomes]
rs73746481	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73746483	0.93[EUR][1000 genomes]
rs73746484	0.93[EUR][1000 genomes]
rs73746485	0.93[EUR][1000 genomes]
rs73746488	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73746490	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73746491	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73746493	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73746494	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73746495	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73746498	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73746499	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73748203	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73748204	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73748205	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73748206	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73748209	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73748211	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73748220	0.93[EUR][1000 genomes]
rs73748221	0.93[EUR][1000 genomes]
rs7743425	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745231	1.00[ASN][1000 genomes]
rs7747121	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752084	0.93[EUR][1000 genomes]
rs7755974	1.00[ASN][1000 genomes]
rs7768163	1.00[ASN][1000 genomes]
rs7771722	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775702	1.00[ASN][1000 genomes]
rs7775879	1.00[ASN][1000 genomes]
rs7776232	1.00[ASN][1000 genomes]
rs9767565	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv517211	chr6:35502202-35607571	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv602924	chr6:35505311-35750299	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv885801	chr6:35537406-35671651	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	esv1812273	chr6:35597703-35629285	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv5258	chr6:35601724-35658344	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
9	nsv821646	chr6:35604428-35802594	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35570200-35608600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:35570800-35611400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:35571200-35611800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:35574800-35607200	Weak transcription	Hela-S3	cervix
5	chr6:35575000-35611600	Strong transcription	Liver	Liver
6	chr6:35575600-35610400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:35577600-35613200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:35583200-35608000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:35584200-35607600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:35585600-35610800	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:35585800-35607800	Weak transcription	Colon Smooth Muscle	Colon
12	chr6:35586800-35613800	Weak transcription	Fetal Stomach	stomach
13	chr6:35587000-35607800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:35587000-35607800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:35588000-35606600	Weak transcription	Brain Anterior Caudate	brain
16	chr6:35588000-35607200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr6:35588000-35608400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr6:35588200-35630800	Weak transcription	Colonic Mucosa	Colon
19	chr6:35589000-35607800	Weak transcription	NHDF-Ad	bronchial
20	chr6:35592000-35610200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr6:35592000-35611400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:35592800-35612000	Weak transcription	HepG2	liver
23	chr6:35594200-35614800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:35594400-35607200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:35594600-35614600	Strong transcription	Fetal Thymus	thymus
26	chr6:35594800-35610600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:35597000-35608400	Weak transcription	Fetal Kidney	kidney
28	chr6:35597000-35615400	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr6:35597400-35613000	Strong transcription	K562	blood
30	chr6:35597600-35611800	Strong transcription	Left Ventricle	heart
31	chr6:35597800-35614200	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr6:35600000-35607800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:35600000-35611200	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr6:35600200-35610400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:35600800-35607800	Strong transcription	NHEK	skin
36	chr6:35601000-35611400	Strong transcription	Thymus	Thymus
37	chr6:35601400-35612000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
38	chr6:35602000-35609600	Strong transcription	Stomach Smooth Muscle	stomach
39	chr6:35602000-35613600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr6:35602200-35611400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr6:35602400-35610600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr6:35602600-35607000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr6:35602600-35607800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr6:35602600-35607800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:35602600-35607800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:35602600-35607800	Weak transcription	Fetal Heart	heart
47	chr6:35602600-35610400	Weak transcription	Fetal Intestine Large	intestine
48	chr6:35602600-35610800	Weak transcription	NHLF	lung
49	chr6:35602600-35612000	Weak transcription	Stomach Mucosa	stomach
50	chr6:35602800-35608800	Weak transcription	Placenta	Placenta

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