Variant report

Variant	rs13340463
Chromosome Location	chr6:35665768-35665769
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs11961458	0.86[EUR][1000 genomes]
rs11961482	0.86[EUR][1000 genomes]
rs11962885	0.86[EUR][1000 genomes]
rs11963387	0.93[EUR][1000 genomes]
rs11963864	0.93[EUR][1000 genomes]
rs11965291	0.93[EUR][1000 genomes]
rs11966198	0.86[EUR][1000 genomes]
rs11966436	0.86[EUR][1000 genomes]
rs12110366	0.93[EUR][1000 genomes]
rs1475774	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16878591	1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs16878806	0.93[EUR][1000 genomes]
rs16879318	0.86[EUR][1000 genomes]
rs16879378	0.86[EUR][1000 genomes]
rs2092427	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28675670	0.93[EUR][1000 genomes]
rs34866878	0.93[EUR][1000 genomes]
rs41270080	0.93[EUR][1000 genomes]
rs45586932	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4713908	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55832955	0.86[EUR][1000 genomes]
rs56002954	0.93[EUR][1000 genomes]
rs56216330	0.93[EUR][1000 genomes]
rs57634040	0.93[EUR][1000 genomes]
rs58873316	0.93[EUR][1000 genomes]
rs59320339	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs59595954	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs60279048	0.86[EUR][1000 genomes]
rs60352056	0.86[EUR][1000 genomes]
rs60645405	0.86[EUR][1000 genomes]
rs61024208	0.93[EUR][1000 genomes]
rs61188051	0.93[EUR][1000 genomes]
rs61734569	0.93[EUR][1000 genomes]
rs6909690	0.86[EUR][1000 genomes]
rs6910435	0.81[EUR][1000 genomes]
rs6917735	0.86[EUR][1000 genomes]
rs6917895	0.86[EUR][1000 genomes]
rs6917988	0.86[EUR][1000 genomes]
rs6925456	0.93[EUR][1000 genomes]
rs6932821	0.86[EUR][1000 genomes]
rs6932968	0.86[EUR][1000 genomes]
rs6933159	0.86[EUR][1000 genomes]
rs73746465	0.93[EUR][1000 genomes]
rs73746467	0.93[EUR][1000 genomes]
rs73746471	0.93[EUR][1000 genomes]
rs73746473	0.93[EUR][1000 genomes]
rs73746475	0.86[EUR][1000 genomes]
rs73746476	0.86[EUR][1000 genomes]
rs73746477	0.86[EUR][1000 genomes]
rs73746478	0.93[EUR][1000 genomes]
rs73746480	0.86[EUR][1000 genomes]
rs73746481	0.93[EUR][1000 genomes]
rs73746483	0.86[EUR][1000 genomes]
rs73746484	0.86[EUR][1000 genomes]
rs73746485	0.86[EUR][1000 genomes]
rs73746488	0.93[EUR][1000 genomes]
rs73746490	0.93[EUR][1000 genomes]
rs73746491	0.93[EUR][1000 genomes]
rs73746494	0.93[EUR][1000 genomes]
rs73746495	0.93[EUR][1000 genomes]
rs73746498	0.93[EUR][1000 genomes]
rs73746499	0.93[EUR][1000 genomes]
rs73748203	0.93[EUR][1000 genomes]
rs73748204	0.86[EUR][1000 genomes]
rs73748205	0.86[EUR][1000 genomes]
rs73748206	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73748209	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73748211	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73748220	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73748221	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7743425	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7747121	0.93[EUR][1000 genomes]
rs7752084	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7771722	0.93[EUR][1000 genomes]
rs9767565	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv602924	chr6:35505311-35750299	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv885801	chr6:35537406-35671651	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	nsv821646	chr6:35604428-35802594	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv885802	chr6:35621781-35787417	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
8	nsv885803	chr6:35621781-35805133	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv885804	chr6:35621781-35809776	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
10	nsv428143	chr6:35637083-35806504	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35657200-35671400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:35657200-35671400	Weak transcription	Thymus	Thymus
3	chr6:35660000-35669000	Weak transcription	HepG2	liver
4	chr6:35665600-35666200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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