Variant report

Variant	rs2092427
Chromosome Location	chr6:35622207-35622208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35620721..35623536-chr6:35629276..35630883,2	K562	blood:
2	chr6:35615240..35617365-chr6:35622051..35624725,2	K562	blood:
3	chr6:35620486..35627650-chr6:35628500..35632953,8	K562	blood:

Variant related genes	Relation type
ENSG00000265527	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1076655	0.80[JPT][hapmap]
rs11961458	0.86[EUR][1000 genomes]
rs11961482	0.86[EUR][1000 genomes]
rs11962885	0.86[EUR][1000 genomes]
rs11963387	0.93[EUR][1000 genomes]
rs11963864	0.93[EUR][1000 genomes]
rs11965291	0.93[EUR][1000 genomes]
rs11966198	0.86[EUR][1000 genomes]
rs11966436	0.86[EUR][1000 genomes]
rs12110366	0.93[EUR][1000 genomes]
rs13340463	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1475774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16878591	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs16878806	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs16879318	0.86[EUR][1000 genomes]
rs16879378	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2273002	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs28675670	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs34866878	0.93[EUR][1000 genomes]
rs41270080	0.93[EUR][1000 genomes]
rs45586932	0.93[EUR][1000 genomes]
rs4713871	0.80[JPT][hapmap]
rs4713880	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs4713901	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs4713908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55832955	0.86[EUR][1000 genomes]
rs56002954	0.93[EUR][1000 genomes]
rs56216330	0.93[EUR][1000 genomes]
rs57634040	0.93[EUR][1000 genomes]
rs58873316	0.93[EUR][1000 genomes]
rs59320339	0.93[EUR][1000 genomes]
rs59595954	0.93[EUR][1000 genomes]
rs60279048	0.86[EUR][1000 genomes]
rs60352056	0.86[EUR][1000 genomes]
rs60645405	0.86[EUR][1000 genomes]
rs61024208	0.93[EUR][1000 genomes]
rs61188051	0.93[EUR][1000 genomes]
rs61734569	0.93[EUR][1000 genomes]
rs6909690	0.86[EUR][1000 genomes]
rs6910435	0.81[EUR][1000 genomes]
rs6917735	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6917895	0.86[EUR][1000 genomes]
rs6917988	0.86[EUR][1000 genomes]
rs6925456	0.93[EUR][1000 genomes]
rs6932821	0.86[EUR][1000 genomes]
rs6932968	0.86[EUR][1000 genomes]
rs6933159	0.86[EUR][1000 genomes]
rs73746465	0.93[EUR][1000 genomes]
rs73746467	0.93[EUR][1000 genomes]
rs73746471	0.93[EUR][1000 genomes]
rs73746473	0.93[EUR][1000 genomes]
rs73746475	0.86[EUR][1000 genomes]
rs73746476	0.86[EUR][1000 genomes]
rs73746477	0.86[EUR][1000 genomes]
rs73746478	0.93[EUR][1000 genomes]
rs73746480	0.86[EUR][1000 genomes]
rs73746481	0.93[EUR][1000 genomes]
rs73746483	0.86[EUR][1000 genomes]
rs73746484	0.86[EUR][1000 genomes]
rs73746485	0.86[EUR][1000 genomes]
rs73746488	0.93[EUR][1000 genomes]
rs73746490	0.93[EUR][1000 genomes]
rs73746491	0.93[EUR][1000 genomes]
rs73746494	0.93[EUR][1000 genomes]
rs73746495	0.93[EUR][1000 genomes]
rs73746498	0.93[EUR][1000 genomes]
rs73746499	0.93[EUR][1000 genomes]
rs73748203	0.93[EUR][1000 genomes]
rs73748204	0.86[EUR][1000 genomes]
rs73748205	0.86[EUR][1000 genomes]
rs73748206	0.93[EUR][1000 genomes]
rs73748209	0.93[EUR][1000 genomes]
rs73748211	0.93[EUR][1000 genomes]
rs73748220	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73748221	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743425	0.93[EUR][1000 genomes]
rs7747121	0.93[EUR][1000 genomes]
rs7751693	1.00[CHB][hapmap]
rs7752084	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771722	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9767565	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv602924	chr6:35505311-35750299	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv885801	chr6:35537406-35671651	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	esv1812273	chr6:35597703-35629285	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv5258	chr6:35601724-35658344	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
8	nsv821646	chr6:35604428-35802594	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	esv1848884	chr6:35607571-35629669	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv1811255	chr6:35614026-35628841	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv1801712	chr6:35614026-35646435	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
12	nsv965719	chr6:35617589-35622224	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv508403	chr6:35619045-35643768	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
14	esv1809645	chr6:35619554-35646435	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
15	nsv885802	chr6:35621781-35787417	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
16	nsv885803	chr6:35621781-35805133	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
17	nsv885804	chr6:35621781-35809776	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35588200-35630800	Weak transcription	Colonic Mucosa	Colon
2	chr6:35608200-35622400	Weak transcription	Fetal Heart	heart
3	chr6:35609000-35622400	Weak transcription	Colon Smooth Muscle	Colon
4	chr6:35609000-35622400	Weak transcription	Esophagus	oesophagus
5	chr6:35609400-35622400	Weak transcription	Lung	lung
6	chr6:35609400-35622400	Weak transcription	Ovary	ovary
7	chr6:35609400-35630400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:35609400-35630600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:35609400-35630800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:35609400-35630800	Weak transcription	Gastric	stomach
11	chr6:35609600-35630200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:35609600-35630600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:35610000-35630800	Weak transcription	Spleen	Spleen
14	chr6:35610000-35630800	Weak transcription	HMEC	breast
15	chr6:35610400-35630600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr6:35610600-35625000	Weak transcription	Right Ventricle	heart
17	chr6:35610600-35630000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:35610600-35630000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:35610600-35630000	Weak transcription	Pancreas	Pancrea
20	chr6:35610600-35630400	Weak transcription	HUVEC	blood vessel
21	chr6:35610600-35630800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr6:35610600-35631200	Weak transcription	Primary hematopoietic stem cells	blood
23	chr6:35611200-35631000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:35611400-35630800	Weak transcription	Brain Substantia Nigra	brain
25	chr6:35611600-35630800	Weak transcription	Brain Anterior Caudate	brain
26	chr6:35611600-35631400	Weak transcription	Primary B cells from cord blood	blood
27	chr6:35612200-35630800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:35613400-35629800	Weak transcription	NHEK	skin
29	chr6:35613400-35630800	Weak transcription	Small Intestine	intestine
30	chr6:35613600-35630800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr6:35613600-35630800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr6:35614000-35630800	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr6:35614200-35625600	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr6:35614200-35630800	Weak transcription	Liver	Liver
35	chr6:35614600-35630800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr6:35614800-35625000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:35615000-35631000	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr6:35615400-35635200	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr6:35615600-35630800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:35616400-35630200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr6:35616600-35622600	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr6:35616600-35622600	Weak transcription	Right Atrium	heart
43	chr6:35616600-35630600	Weak transcription	Thymus	Thymus
44	chr6:35617400-35623000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr6:35618000-35623200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr6:35618800-35622400	Weak transcription	Left Ventricle	heart
47	chr6:35618800-35629600	Weak transcription	Primary T cells from cord blood	blood
48	chr6:35619600-35630800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr6:35619600-35630800	Weak transcription	K562	blood
50	chr6:35620800-35622400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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