Variant report

Variant	rs45492197
Chromosome Location	chr6:35433014-35433015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:35433006-35433017	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:35309215..35314259-chr6:35432456..35439068,10	MCF-7	breast:
2	chr6:35432131..35435121-chr6:35435197..35437523,2	K562	blood:
3	chr6:35415818..35424678-chr6:35432486..35440672,36	K562	blood:

Variant related genes	Relation type
RPL10A	TF binding region
ENSG00000198755	Chromatin interaction
ENSG00000112039	Chromatin interaction
ENSG00000112033	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10947553	1.00[ASN][1000 genomes]
rs11962571	1.00[ASN][1000 genomes]
rs11963387	1.00[ASN][1000 genomes]
rs11963864	1.00[ASN][1000 genomes]
rs11965291	1.00[ASN][1000 genomes]
rs11966198	1.00[ASN][1000 genomes]
rs11966959	1.00[ASN][1000 genomes]
rs12110366	1.00[ASN][1000 genomes]
rs16878591	1.00[ASN][1000 genomes]
rs16878806	1.00[ASN][1000 genomes]
rs16879318	1.00[ASN][1000 genomes]
rs16879378	1.00[ASN][1000 genomes]
rs2395620	1.00[ASN][1000 genomes]
rs28675670	1.00[ASN][1000 genomes]
rs34866878	1.00[ASN][1000 genomes]
rs41270080	1.00[ASN][1000 genomes]
rs45484291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs45532932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs45586932	1.00[ASN][1000 genomes]
rs45614138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56002954	1.00[ASN][1000 genomes]
rs56093109	1.00[ASN][1000 genomes]
rs57634040	1.00[ASN][1000 genomes]
rs58873316	1.00[ASN][1000 genomes]
rs59320339	1.00[ASN][1000 genomes]
rs59595954	1.00[ASN][1000 genomes]
rs60156710	1.00[ASN][1000 genomes]
rs61024208	1.00[ASN][1000 genomes]
rs61188051	1.00[ASN][1000 genomes]
rs61734569	1.00[ASN][1000 genomes]
rs6902870	1.00[ASN][1000 genomes]
rs6903096	1.00[ASN][1000 genomes]
rs6913026	1.00[ASN][1000 genomes]
rs6925456	1.00[ASN][1000 genomes]
rs6936165	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6937483	1.00[ASN][1000 genomes]
rs6940708	1.00[ASN][1000 genomes]
rs6940722	1.00[ASN][1000 genomes]
rs6941244	1.00[ASN][1000 genomes]
rs73413737	1.00[ASN][1000 genomes]
rs73746465	1.00[ASN][1000 genomes]
rs73746467	1.00[ASN][1000 genomes]
rs73746471	1.00[ASN][1000 genomes]
rs73746473	1.00[ASN][1000 genomes]
rs73746478	1.00[ASN][1000 genomes]
rs73746481	1.00[ASN][1000 genomes]
rs73746488	1.00[ASN][1000 genomes]
rs73746490	1.00[ASN][1000 genomes]
rs73746491	1.00[ASN][1000 genomes]
rs73746493	1.00[ASN][1000 genomes]
rs73746494	1.00[ASN][1000 genomes]
rs73746495	1.00[ASN][1000 genomes]
rs73746498	1.00[ASN][1000 genomes]
rs73746499	1.00[ASN][1000 genomes]
rs73748203	1.00[ASN][1000 genomes]
rs73748204	1.00[ASN][1000 genomes]
rs73748205	1.00[ASN][1000 genomes]
rs73748206	1.00[ASN][1000 genomes]
rs73748209	1.00[ASN][1000 genomes]
rs73748211	1.00[ASN][1000 genomes]
rs7743425	1.00[ASN][1000 genomes]
rs7745039	1.00[ASN][1000 genomes]
rs7747121	1.00[ASN][1000 genomes]
rs7754530	1.00[ASN][1000 genomes]
rs7755021	1.00[ASN][1000 genomes]
rs7757196	1.00[ASN][1000 genomes]
rs7758125	1.00[ASN][1000 genomes]
rs7766007	1.00[ASN][1000 genomes]
rs7768163	1.00[ASN][1000 genomes]
rs7768741	1.00[ASN][1000 genomes]
rs7771222	1.00[ASN][1000 genomes]
rs7771722	1.00[ASN][1000 genomes]
rs9462080	1.00[ASN][1000 genomes]
rs9470018	1.00[ASN][1000 genomes]
rs9658060	1.00[ASN][1000 genomes]
rs9658118	1.00[ASN][1000 genomes]
rs9658126	1.00[ASN][1000 genomes]
rs9658136	1.00[ASN][1000 genomes]
rs9658141	1.00[ASN][1000 genomes]
rs9767565	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
3	nsv885799	chr6:35378778-35442397	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
4	nsv462908	chr6:35378778-35457396	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
5	nsv602910	chr6:35378778-35457396	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
6	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
7	nsv969390	chr6:35428276-35434702	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
8	nsv984463	chr6:35432948-35477634	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35421000-35435400	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:35421200-35435200	Weak transcription	Brain Angular Gyrus	brain
3	chr6:35421200-35435400	Weak transcription	Brain Anterior Caudate	brain
4	chr6:35421400-35435400	Weak transcription	Colonic Mucosa	Colon
5	chr6:35421400-35435400	Weak transcription	Fetal Kidney	kidney
6	chr6:35421400-35435400	Weak transcription	Pancreas	Pancrea
7	chr6:35421600-35433800	Weak transcription	HUVEC	blood vessel
8	chr6:35421600-35435200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:35421600-35435200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:35421600-35435400	Weak transcription	A549	lung
11	chr6:35421600-35435400	Weak transcription	NH-A	brain
12	chr6:35422200-35435200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:35422200-35435400	Weak transcription	Small Intestine	intestine
14	chr6:35422400-35434800	Strong transcription	Fetal Intestine Small	intestine
15	chr6:35422600-35435400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:35422800-35434800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:35422800-35434800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:35422800-35435200	Weak transcription	Fetal Thymus	thymus
19	chr6:35422800-35435400	Weak transcription	Fetal Brain Male	brain
20	chr6:35422800-35435600	Weak transcription	Right Atrium	heart
21	chr6:35423000-35435200	Weak transcription	Fetal Heart	heart
22	chr6:35423000-35435200	Strong transcription	Fetal Stomach	stomach
23	chr6:35423000-35435400	Weak transcription	NHDF-Ad	bronchial
24	chr6:35423200-35435200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:35423400-35434600	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr6:35423400-35434800	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:35423400-35435200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:35423400-35435400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:35424000-35435600	Weak transcription	Psoas Muscle	Psoas
30	chr6:35424200-35435400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:35426600-35435400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:35427200-35435200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr6:35427400-35433400	Weak transcription	Primary hematopoietic stem cells	blood
34	chr6:35427400-35435400	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr6:35427600-35433400	Weak transcription	Brain Substantia Nigra	brain
36	chr6:35427600-35434000	Weak transcription	HepG2	liver
37	chr6:35427600-35435400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr6:35427600-35435400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr6:35427600-35435400	Weak transcription	Left Ventricle	heart
40	chr6:35427600-35435400	Weak transcription	Rectal Smooth Muscle	rectum
41	chr6:35427800-35433400	Weak transcription	Primary B cells from cord blood	blood
42	chr6:35427800-35433400	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr6:35427800-35433400	Weak transcription	Hela-S3	cervix
44	chr6:35427800-35434000	Weak transcription	HSMMtube	muscle
45	chr6:35427800-35435200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr6:35427800-35435200	Weak transcription	Primary T cells from cord blood	blood
47	chr6:35427800-35435200	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr6:35427800-35435400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:35427800-35435400	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr6:35427800-35435400	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links