The 2.0 version of rSNPBase

Variant report

Variant rs11962571
Chromosome Location chr6:35332153-35332154
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:96 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:35313000-35335600 Weak transcription Small Intestine intestine
2 chr6:35317400-35333000 Weak transcription Primary hematopoietic stem cells blood
3 chr6:35321000-35342400 Weak transcription Fetal Kidney kidney
4 chr6:35322000-35336000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
5 chr6:35325200-35335800 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr6:35325400-35335600 Weak transcription Dnd41 blood
7 chr6:35326400-35335600 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr6:35327000-35336200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
9 chr6:35327600-35335800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
10 chr6:35328400-35332200 Enhancers Fetal Heart heart
11 chr6:35328400-35344800 Weak transcription Fetal Lung lung
12 chr6:35328600-35335200 Weak transcription Duodenum Mucosa Duodenum
13 chr6:35328800-35335000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr6:35328800-35336000 Weak transcription HMEC breast
15 chr6:35329000-35335200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
16 chr6:35329000-35335200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr6:35329000-35335800 Weak transcription Duodenum Smooth Muscle Duodenum
18 chr6:35329000-35336600 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr6:35329000-35350800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
20 chr6:35329200-35334800 Weak transcription Primary B cells from cord blood blood
21 chr6:35329200-35335400 Weak transcription Adipose Nuclei Adipose
22 chr6:35329200-35335400 Weak transcription Esophagus oesophagus
23 chr6:35329200-35335400 Weak transcription Spleen Spleen
24 chr6:35329200-35335400 Weak transcription HepG2 liver
25 chr6:35329200-35336000 Weak transcription Colon Smooth Muscle Colon
26 chr6:35329200-35337800 Weak transcription Ovary ovary
27 chr6:35329600-35336000 Weak transcription Pancreas Pancrea
28 chr6:35329600-35338400 Weak transcription Stomach Smooth Muscle stomach
29 chr6:35330000-35332200 Enhancers NHDF-Ad bronchial
30 chr6:35330400-35336000 Weak transcription Primary T cells from cord blood blood
31 chr6:35330600-35332200 Enhancers Brain Angular Gyrus brain
32 chr6:35330600-35336000 Weak transcription Primary T regulatory cells fromperipheralblood blood
33 chr6:35330800-35333600 Weak transcription Primary B cells from peripheral blood blood
34 chr6:35331000-35333400 Weak transcription Primary T helper naive cells from peripheral blood blood
35 chr6:35331000-35335200 Weak transcription NHLF lung
36 chr6:35331000-35335800 Weak transcription Primary T helper cells fromperipheralblood blood
37 chr6:35331200-35333600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
38 chr6:35331200-35335400 Weak transcription NH-A brain
39 chr6:35331200-35335600 Weak transcription Primary T killer naive cells fromperipheralblood blood
40 chr6:35331200-35336200 Weak transcription Primary T killer memory cells from peripheral blood blood
41 chr6:35331200-35336400 Weak transcription Thymus Thymus
42 chr6:35331200-35337800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
43 chr6:35331200-35350800 Weak transcription H9 Cell Line embryonic stem cell
44 chr6:35331400-35333200 Weak transcription Primary T helper naive cells fromperipheralblood blood
45 chr6:35331400-35333400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
46 chr6:35331400-35333600 Weak transcription Primary T helper cells PMA-I stimulated --
47 chr6:35331400-35333600 Weak transcription GM12878-XiMat blood
48 chr6:35331400-35334600 Weak transcription Breast Myoepithelial Primary Cells Breast
49 chr6:35331400-35334800 Weak transcription Brain Hippocampus Middle brain
50 chr6:35331400-35335200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain

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Last update: Aug 31, 2015