Variant report

Variant	rs7762983
Chromosome Location	chr6:35306539-35306540
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11962571	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11966959	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2395620	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6902870	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6903096	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6910489	1.00[ASN][1000 genomes]
rs6913026	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6915115	1.00[ASN][1000 genomes]
rs6937483	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6940708	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6940722	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73413734	1.00[ASN][1000 genomes]
rs7745039	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7754530	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7766007	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768741	1.00[AMR][1000 genomes]
rs9658056	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9658060	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9658108	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv602907	chr6:35285720-35312267	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35286600-35310000	Weak transcription	Right Atrium	heart
2	chr6:35291600-35309600	Weak transcription	Dnd41	blood
3	chr6:35293200-35309600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:35300400-35308800	Weak transcription	Placenta	Placenta
5	chr6:35300600-35309800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:35300800-35309600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:35300800-35309800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr6:35305600-35309600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:35306200-35307200	Weak transcription	Primary neutrophils fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links