Variant report

Variant	rs9658060
Chromosome Location	chr6:35310649-35310650
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35308697..35314051-chr6:35417510..35421585,8	K562	blood:
2	chr6:35308405..35313609-chr6:35434054..35440248,12	K562	blood:
3	chr6:35308378..35313609-chr6:35433550..35439145,12	K562	blood:
4	chr6:35310114..35311915-chr6:35462651..35465491,3	MCF-7	breast:
5	chr6:35310404..35313411-chr6:35381684..35386621,4	MCF-7	breast:
6	chr6:35310116..35312027-chr6:35462385..35465150,2	MCF-7	breast:
7	chr6:35309667..35310668-chr6:35435356..35436547,17	K562	blood:
8	chr6:35225346..35227530-chr6:35309507..35311733,2	MCF-7	breast:
9	chr6:35284608..35286901-chr6:35310270..35311991,2	MCF-7	breast:
10	chr6:35310112..35312932-chr6:35464368..35466518,2	K562	blood:
11	chr6:35309118..35313462-chr6:35418133..35422102,7	MCF-7	breast:
12	chr6:35309215..35314259-chr6:35432456..35439068,10	MCF-7	breast:
13	chr15:45003255..45004064-chr6:35309943..35310848,2	Hela-S3	cervix:
14	chr6:35261055..35266113-chr6:35308586..35312212,6	K562	blood:
15	chr6:35309852..35312289-chr6:35417832..35421264,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000229474	Chromatin interaction
ENSG00000023892	Chromatin interaction
ENSG00000198755	Chromatin interaction
ENSG00000112039	Chromatin interaction
ENSG00000065029	Chromatin interaction
ENSG00000007866	Chromatin interaction
ENSG00000166710	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10947553	1.00[ASN][1000 genomes]
rs11962571	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11963387	1.00[ASN][1000 genomes]
rs11963864	1.00[ASN][1000 genomes]
rs11966959	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2395620	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45484291	1.00[ASN][1000 genomes]
rs45492197	1.00[ASN][1000 genomes]
rs45532932	1.00[ASN][1000 genomes]
rs45614138	1.00[ASN][1000 genomes]
rs56093109	1.00[ASN][1000 genomes]
rs61734569	1.00[ASN][1000 genomes]
rs6902870	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6903096	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913026	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925456	1.00[ASN][1000 genomes]
rs6936165	1.00[ASN][1000 genomes]
rs6937483	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940708	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940722	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941244	1.00[ASN][1000 genomes]
rs73413737	1.00[ASN][1000 genomes]
rs73746465	1.00[ASN][1000 genomes]
rs73746467	1.00[ASN][1000 genomes]
rs73746471	1.00[ASN][1000 genomes]
rs7745039	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754530	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755021	1.00[ASN][1000 genomes]
rs7757196	1.00[ASN][1000 genomes]
rs7758125	1.00[ASN][1000 genomes]
rs7762983	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7766007	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768163	1.00[ASN][1000 genomes]
rs7768741	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7771222	1.00[ASN][1000 genomes]
rs9462080	1.00[ASN][1000 genomes]
rs9470018	1.00[ASN][1000 genomes]
rs9658056	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9658118	1.00[ASN][1000 genomes]
rs9658126	1.00[ASN][1000 genomes]
rs9658136	1.00[ASN][1000 genomes]
rs9658141	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv602907	chr6:35285720-35312267	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35309600-35311000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:35309800-35310800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:35309800-35310800	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr6:35309800-35311000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:35309800-35311000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:35309800-35311600	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr6:35309800-35311600	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr6:35309800-35312800	Active TSS	GM12878-XiMat	blood
9	chr6:35310000-35310800	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr6:35310000-35310800	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr6:35310000-35310800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
12	chr6:35310000-35310800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:35310000-35310800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:35310000-35310800	Active TSS	Duodenum Mucosa	Duodenum
15	chr6:35310000-35310800	Active TSS	Fetal Brain Female	brain
16	chr6:35310000-35310800	Active TSS	Skeletal Muscle Female	skeletal muscle
17	chr6:35310000-35310800	Active TSS	Hela-S3	cervix
18	chr6:35310000-35311000	Active TSS	HUES64 Cell Line	embryonic stem cell
19	chr6:35310000-35311000	Active TSS	Fetal Kidney	kidney
20	chr6:35310000-35311200	Active TSS	Fetal Stomach	stomach
21	chr6:35310000-35311200	Active TSS	NHEK	skin
22	chr6:35310000-35311400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:35310000-35312000	Active TSS	HSMM	muscle
24	chr6:35310200-35310800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:35310200-35310800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr6:35310200-35310800	Active TSS	HUES6 Cell Line	embryonic stem cell
27	chr6:35310200-35310800	Active TSS	iPS-18 Cell Line	embryonic stem cell
28	chr6:35310200-35310800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr6:35310200-35310800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:35310200-35310800	Active TSS	Primary monocytes fromperipheralblood	blood
31	chr6:35310200-35310800	Active TSS	Primary B cells from peripheral blood	blood
32	chr6:35310200-35310800	Active TSS	Primary T cells from cord blood	blood
33	chr6:35310200-35310800	Active TSS	Primary T helper naive cells from peripheral blood	blood
34	chr6:35310200-35310800	Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr6:35310200-35310800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
36	chr6:35310200-35310800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
37	chr6:35310200-35310800	Active TSS	Primary T killer memory cells from peripheral blood	blood
38	chr6:35310200-35310800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr6:35310200-35310800	Active TSS	Adipose Nuclei	Adipose
40	chr6:35310200-35310800	Active TSS	Liver	Liver
41	chr6:35310200-35310800	Active TSS	Brain Anterior Caudate	brain
42	chr6:35310200-35310800	Active TSS	Brain Inferior Temporal Lobe	brain
43	chr6:35310200-35310800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
44	chr6:35310200-35310800	Active TSS	Rectal Mucosa Donor 31	rectum
45	chr6:35310200-35310800	Active TSS	Right Ventricle	heart
46	chr6:35310200-35310800	Active TSS	Sigmoid Colon	Sigmoid Colon
47	chr6:35310200-35310800	Active TSS	Stomach Smooth Muscle	stomach
48	chr6:35310200-35310800	Active TSS	Thymus	Thymus
49	chr6:35310200-35310800	Active TSS	Spleen	Spleen
50	chr6:35310200-35310800	Active TSS	Dnd41	blood

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