Variant report

Variant	rs73421726
Chromosome Location	chr6:35744168-35744169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr6:35744100-35744668	ECC-1	luminal epithelium:	n/a	chr6:35744322-35744333
2	USF2	chr6:35744137-35744544	H1-hESC	embryonic stem cell:	n/a	n/a
3	MAX	chr6:35744042-35744603	A549	lung:	n/a	chr6:35744323-35744334 chr6:35744322-35744335 chr6:35744324-35744333 chr6:35744324-35744333
4	USF1	chr6:35744116-35744552	A549	lung:	n/a	chr6:35744322-35744333
5	HA-E2F1	chr6:35744046-35744892	MCF-7	breast:	n/a	chr6:35744243-35744250
6	USF1	chr6:35744096-35744608	K562	blood:	n/a	chr6:35744322-35744333
7	ATF3	chr6:35744121-35744436	H1-hESC	embryonic stem cell:	n/a	n/a
8	USF1	chr6:35744081-35744561	H1-hESC	embryonic stem cell:	n/a	chr6:35744322-35744333
9	USF1	chr6:35744153-35744642	SK-N-SH	brain:	n/a	chr6:35744322-35744333
10	USF1	chr6:35744137-35744438	GM12878	blood:	n/a	chr6:35744322-35744333
11	MAX	chr6:35744136-35744587	K562	blood:	n/a	chr6:35744323-35744334 chr6:35744322-35744335 chr6:35744324-35744333 chr6:35744324-35744333
12	MAX	chr6:35744166-35744393	K562	blood:	n/a	chr6:35744323-35744334 chr6:35744322-35744335 chr6:35744324-35744333 chr6:35744324-35744333
13	CTCF	chr6:35744160-35744310	WERI-Rb-1	eye:	n/a	n/a
14	POLR2A	chr6:35744063-35744854	H1-hESC	embryonic stem cell:	n/a	n/a
15	MAX	chr6:35744021-35744676	ECC-1	luminal epithelium:	n/a	chr6:35744323-35744334 chr6:35744322-35744335 chr6:35744324-35744333 chr6:35744324-35744333
16	POLR2A	chr6:35744161-35744355	H1-hESC	embryonic stem cell:	n/a	n/a
17	MAX	chr6:35744029-35745014	H1-hESC	embryonic stem cell:	n/a	chr6:35744323-35744334 chr6:35744322-35744335 chr6:35744324-35744333 chr6:35744324-35744333
18	MAX	chr6:35744083-35744857	MCF-7	breast:	n/a	chr6:35744323-35744334 chr6:35744322-35744335 chr6:35744324-35744333 chr6:35744324-35744333
19	USF1	chr6:35744165-35744452	SK-N-SH_RA	brain:	n/a	chr6:35744322-35744333
20	ZNF263	chr6:35744114-35744754	HEK293-T-REx	kidney:	n/a	chr6:35744279-35744300 chr6:35744255-35744264 chr6:35744245-35744266
21	E2F6	chr6:35744162-35744434	K562	blood:	n/a	chr6:35744243-35744250
22	USF1	chr6:35744037-35744722	ECC-1	luminal epithelium:	n/a	chr6:35744322-35744333
23	ZBTB7A	chr6:35744095-35744938	ECC-1	luminal epithelium:	n/a	n/a
24	RAD21	chr6:35744155-35744829	H1-hESC	embryonic stem cell:	n/a	chr6:35744646-35744665
25	USF1	chr6:35744030-35744566	A549	lung:	n/a	chr6:35744322-35744333
26	USF1	chr6:35744140-35744454	A549	lung:	n/a	chr6:35744322-35744333
27	USF1	chr6:35744152-35744450	A549	lung:	n/a	chr6:35744322-35744333
28	TBP	chr6:35744155-35744679	H1-hESC	embryonic stem cell:	n/a	n/a
29	USF1	chr6:35743992-35744738	HCT-116	colon:	n/a	chr6:35744322-35744333
30	EGR1	chr6:35744121-35744445	K562	blood:	n/a	n/a
31	ZBTB7A	chr6:35744052-35745218	ECC-1	luminal epithelium:	n/a	n/a
32	MAX	chr6:35744153-35744393	H1-hESC	embryonic stem cell:	n/a	chr6:35744323-35744334 chr6:35744322-35744335 chr6:35744324-35744333 chr6:35744324-35744333
33	TAF7	chr6:35744135-35744508	H1-hESC	embryonic stem cell:	n/a	n/a
34	E2F6	chr6:35743944-35745054	H1-hESC	embryonic stem cell:	n/a	chr6:35744243-35744250
35	MAX	chr6:35744028-35744680	A549	lung:	n/a	chr6:35744323-35744334 chr6:35744322-35744335 chr6:35744324-35744333 chr6:35744324-35744333
36	USF1	chr6:35744043-35744748	HCT-116	colon:	n/a	chr6:35744322-35744333
37	USF1	chr6:35744093-35744601	SK-N-SH	brain:	n/a	chr6:35744322-35744333
38	USF1	chr6:35744094-35744483	SK-N-SH_RA	brain:	n/a	chr6:35744322-35744333
39	USF1	chr6:35744061-35744662	H1-hESC	embryonic stem cell:	n/a	chr6:35744322-35744333
40	E2F6	chr6:35744039-35744594	A549	lung:	n/a	chr6:35744243-35744250
41	EGR1	chr6:35744158-35744456	K562	blood:	n/a	n/a
42	USF1	chr6:35744142-35744466	A549	lung:	n/a	chr6:35744322-35744333
43	NR2F2	chr6:35744114-35744920	MCF-7	breast:	n/a	n/a
44	MAX	chr6:35744093-35744690	ECC-1	luminal epithelium:	n/a	chr6:35744323-35744334 chr6:35744322-35744335 chr6:35744324-35744333 chr6:35744324-35744333
45	POLR2A	chr6:35744114-35744808	H1-hESC	embryonic stem cell:	n/a	n/a
46	E2F6	chr6:35744037-35744939	H1-hESC	embryonic stem cell:	n/a	chr6:35744243-35744250
47	MAX	chr6:35744151-35744885	H1-hESC	embryonic stem cell:	n/a	chr6:35744323-35744334 chr6:35744322-35744335 chr6:35744324-35744333 chr6:35744324-35744333
48	ELF1	chr6:35744129-35744750	GM12878	blood:	n/a	chr6:35744459-35744472

No.	Distal block	Cell Line	Cell type
1	chr6:35742984..35745597-chr6:35763979..35765844,2	MCF-7	breast:
2	chr6:35732876..35736019-chr6:35742978..35745750,3	MCF-7	breast:
3	chr6:35743802..35745883-chr6:35771884..35774045,2	MCF-7	breast:

Variant related genes	Relation type
CLPSL1	TF binding region
CLPSL2	TF binding region
ENSG00000220734	Chromatin interaction
ENSG00000137392	Chromatin interaction
ENSG00000197753	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11965291	1.00[ASN][1000 genomes]
rs11966198	1.00[ASN][1000 genomes]
rs12110366	1.00[ASN][1000 genomes]
rs16878591	1.00[ASN][1000 genomes]
rs16878806	1.00[ASN][1000 genomes]
rs16879318	1.00[ASN][1000 genomes]
rs16879378	1.00[ASN][1000 genomes]
rs28675670	1.00[ASN][1000 genomes]
rs34866878	1.00[ASN][1000 genomes]
rs41270080	1.00[ASN][1000 genomes]
rs45586932	1.00[ASN][1000 genomes]
rs56002954	1.00[ASN][1000 genomes]
rs57364044	1.00[ASN][1000 genomes]
rs57599664	1.00[ASN][1000 genomes]
rs57634040	1.00[ASN][1000 genomes]
rs58580399	1.00[ASN][1000 genomes]
rs58873316	1.00[ASN][1000 genomes]
rs59320339	1.00[ASN][1000 genomes]
rs59595954	1.00[ASN][1000 genomes]
rs60156710	1.00[ASN][1000 genomes]
rs61024208	1.00[ASN][1000 genomes]
rs61188051	1.00[ASN][1000 genomes]
rs61731466	1.00[ASN][1000 genomes]
rs6457849	1.00[ASN][1000 genomes]
rs73729766	1.00[ASN][1000 genomes]
rs73746478	1.00[ASN][1000 genomes]
rs73746481	1.00[ASN][1000 genomes]
rs73746488	1.00[ASN][1000 genomes]
rs73746490	1.00[ASN][1000 genomes]
rs73746491	1.00[ASN][1000 genomes]
rs73746493	1.00[ASN][1000 genomes]
rs73746494	1.00[ASN][1000 genomes]
rs73746495	1.00[ASN][1000 genomes]
rs73746498	1.00[ASN][1000 genomes]
rs73746499	1.00[ASN][1000 genomes]
rs73748203	1.00[ASN][1000 genomes]
rs73748204	1.00[ASN][1000 genomes]
rs73748205	1.00[ASN][1000 genomes]
rs73748206	1.00[ASN][1000 genomes]
rs73748209	1.00[ASN][1000 genomes]
rs73748211	1.00[ASN][1000 genomes]
rs7743425	1.00[ASN][1000 genomes]
rs7745231	1.00[ASN][1000 genomes]
rs7747121	1.00[ASN][1000 genomes]
rs7755974	1.00[ASN][1000 genomes]
rs7771722	1.00[ASN][1000 genomes]
rs7775702	1.00[ASN][1000 genomes]
rs7775879	1.00[ASN][1000 genomes]
rs7776232	1.00[ASN][1000 genomes]
rs9767565	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv602924	chr6:35505311-35750299	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv821646	chr6:35604428-35802594	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv885802	chr6:35621781-35787417	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
7	nsv885803	chr6:35621781-35805133	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv885804	chr6:35621781-35809776	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv428143	chr6:35637083-35806504	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
10	nsv885805	chr6:35685955-35779879	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
11	nsv524941	chr6:35734051-35745655	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv525686	chr6:35734051-35750299	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	esv2762585	chr6:35734884-35747108	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35732400-35744200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:35739600-35744200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:35740000-35744200	Weak transcription	Primary B cells from cord blood	blood
4	chr6:35743000-35744200	Weak transcription	Right Atrium	heart
5	chr6:35743800-35744200	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:35743800-35744200	Bivalent Enhancer	Placenta	Placenta
7	chr6:35744000-35744200	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:35744000-35744200	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:35744000-35744200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
10	chr6:35744000-35744200	Enhancers	Primary B cells from peripheral blood	blood
11	chr6:35744000-35744200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
12	chr6:35744000-35744200	Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr6:35744000-35744200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:35744000-35744200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
15	chr6:35744000-35744200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr6:35744000-35744200	Bivalent Enhancer	Fetal Stomach	stomach
17	chr6:35744000-35744200	Active TSS	Right Ventricle	heart
18	chr6:35744000-35744200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
19	chr6:35744000-35744200	Bivalent Enhancer	HMEC	breast
20	chr6:35744000-35744400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:35744000-35744400	Bivalent/Poised TSS	Fetal Brain Female	brain
22	chr6:35744000-35744400	Bivalent/Poised TSS	HepG2	liver
23	chr6:35744000-35744600	Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr6:35744000-35744600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
25	chr6:35744000-35744600	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:35744000-35744600	Active TSS	Cortex derived primary cultured neurospheres	brain
27	chr6:35744000-35744600	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
28	chr6:35744000-35744600	Bivalent/Poised TSS	NHEK	skin
29	chr6:35744000-35744800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
30	chr6:35744000-35744800	Active TSS	HUES48 Cell Line	embryonic stem cell
31	chr6:35744000-35744800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
32	chr6:35744000-35744800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
33	chr6:35744000-35744800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr6:35744000-35744800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
35	chr6:35744000-35744800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:35744000-35744800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr6:35744000-35744800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:35744000-35744800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:35744000-35744800	Active TSS	Duodenum Mucosa	Duodenum
40	chr6:35744000-35744800	Active TSS	A549	lung
41	chr6:35744000-35745000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
42	chr6:35744000-35745000	Active TSS	H9 Cell Line	embryonic stem cell
43	chr6:35744000-35745000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:35744000-35745000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:35744000-35745000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr6:35744000-35745400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links