Variant report

Variant	rs58580399
Chromosome Location	chr6:35678054-35678055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35676282..35678828-chr6:35694562..35696516,2	MCF-7	breast:
2	chr6:35677116..35678875-chr6:35688132..35689859,2	K562	blood:
3	chr6:35677094..35679566-chr6:35684897..35686689,2	K562	blood:
4	chr6:35677736..35680462-chr6:35681912..35686397,4	K562	blood:
5	chr6:35652995..35655572-chr6:35676396..35678157,2	K562	blood:

Variant related genes	Relation type
ENSG00000096060	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10947553	1.00[ASN][1000 genomes]
rs11963387	1.00[ASN][1000 genomes]
rs11963864	1.00[ASN][1000 genomes]
rs11965291	1.00[ASN][1000 genomes]
rs11966198	1.00[ASN][1000 genomes]
rs12110366	1.00[ASN][1000 genomes]
rs16878591	1.00[ASN][1000 genomes]
rs16878806	1.00[ASN][1000 genomes]
rs16879318	1.00[ASN][1000 genomes]
rs16879378	1.00[ASN][1000 genomes]
rs28675670	1.00[ASN][1000 genomes]
rs34866878	1.00[ASN][1000 genomes]
rs41270080	1.00[ASN][1000 genomes]
rs45586932	1.00[ASN][1000 genomes]
rs56002954	1.00[ASN][1000 genomes]
rs56093109	1.00[ASN][1000 genomes]
rs57364044	1.00[ASN][1000 genomes]
rs57599664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57634040	1.00[ASN][1000 genomes]
rs58873316	1.00[ASN][1000 genomes]
rs59320339	1.00[ASN][1000 genomes]
rs59595954	1.00[ASN][1000 genomes]
rs60156710	1.00[ASN][1000 genomes]
rs61024208	1.00[ASN][1000 genomes]
rs61188051	1.00[ASN][1000 genomes]
rs61731466	1.00[ASN][1000 genomes]
rs61734569	1.00[ASN][1000 genomes]
rs6457849	1.00[ASN][1000 genomes]
rs6925456	1.00[ASN][1000 genomes]
rs6941244	1.00[ASN][1000 genomes]
rs73421726	1.00[ASN][1000 genomes]
rs73729766	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73746465	1.00[ASN][1000 genomes]
rs73746467	1.00[ASN][1000 genomes]
rs73746471	1.00[ASN][1000 genomes]
rs73746473	1.00[ASN][1000 genomes]
rs73746478	1.00[ASN][1000 genomes]
rs73746481	1.00[ASN][1000 genomes]
rs73746488	1.00[ASN][1000 genomes]
rs73746490	1.00[ASN][1000 genomes]
rs73746491	1.00[ASN][1000 genomes]
rs73746493	1.00[ASN][1000 genomes]
rs73746494	1.00[ASN][1000 genomes]
rs73746495	1.00[ASN][1000 genomes]
rs73746498	1.00[ASN][1000 genomes]
rs73746499	1.00[ASN][1000 genomes]
rs73748203	1.00[ASN][1000 genomes]
rs73748204	1.00[ASN][1000 genomes]
rs73748205	1.00[ASN][1000 genomes]
rs73748206	1.00[ASN][1000 genomes]
rs73748209	1.00[ASN][1000 genomes]
rs73748211	1.00[ASN][1000 genomes]
rs7743425	1.00[ASN][1000 genomes]
rs7745231	1.00[ASN][1000 genomes]
rs7747121	1.00[ASN][1000 genomes]
rs7755974	1.00[ASN][1000 genomes]
rs7768163	1.00[ASN][1000 genomes]
rs7771722	1.00[ASN][1000 genomes]
rs7775702	1.00[ASN][1000 genomes]
rs7775879	1.00[ASN][1000 genomes]
rs7776232	1.00[ASN][1000 genomes]
rs9767565	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv602924	chr6:35505311-35750299	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv821646	chr6:35604428-35802594	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv885802	chr6:35621781-35787417	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
7	nsv885803	chr6:35621781-35805133	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv885804	chr6:35621781-35809776	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv428143	chr6:35637083-35806504	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
10	nsv1028947	chr6:35670521-35714541	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35667200-35681200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:35670000-35684600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:35671800-35680000	Weak transcription	Small Intestine	intestine
4	chr6:35671800-35683200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:35675600-35680400	Weak transcription	Gastric	stomach
6	chr6:35676000-35680200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:35677600-35678400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:35677600-35678400	Enhancers	Thymus	Thymus
9	chr6:35677600-35678600	Enhancers	HMEC	breast
10	chr6:35677800-35678200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:35677800-35678200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:35677800-35678400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:35677800-35678400	Enhancers	Primary T cells fromperipheralblood	blood
14	chr6:35677800-35678400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr6:35677800-35678400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:35677800-35678400	Enhancers	Pancreas	Pancrea
17	chr6:35677800-35678600	Enhancers	NHEK	skin
18	chr6:35677800-35679000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:35677800-35679000	Enhancers	Fetal Thymus	thymus
20	chr6:35677800-35683400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:35678000-35678200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:35678000-35678200	Enhancers	Placenta Amnion	Placenta Amnion
23	chr6:35678000-35678400	Enhancers	HepG2	liver
24	chr6:35678000-35678400	Enhancers	K562	blood
25	chr6:35678000-35679000	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr6:35678000-35680400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr6:35678000-35680400	Weak transcription	Spleen	Spleen
28	chr6:35678000-35685000	Weak transcription	Esophagus	oesophagus

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