Variant report

Variant	rs57364044
Chromosome Location	chr6:35743198-35743199
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ESR1	chr6:35742744-35743220	T-47D	breast:	n/a	n/a
2	REST	chr6:35742806-35743290	PFSK-1	brain:	n/a	n/a
3	ESR1	chr6:35742690-35743269	T-47D	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:35742984..35745597-chr6:35763979..35765844,2	MCF-7	breast:
2	chr6:35732876..35736019-chr6:35742978..35745750,3	MCF-7	breast:
3	chr6:35741595..35743750-chr6:35746332..35747980,2	K562	blood:
4	chr6:35535585..35537526-chr6:35741367..35743409,2	K562	blood:

Variant related genes	Relation type
CLPSL2	TF binding region
ENSG00000220734	Chromatin interaction
ENSG00000137392	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11965291	1.00[ASN][1000 genomes]
rs11966198	1.00[ASN][1000 genomes]
rs12110366	1.00[ASN][1000 genomes]
rs16878591	1.00[ASN][1000 genomes]
rs16878806	1.00[ASN][1000 genomes]
rs16879318	1.00[ASN][1000 genomes]
rs16879378	1.00[ASN][1000 genomes]
rs28675670	1.00[ASN][1000 genomes]
rs34866878	1.00[ASN][1000 genomes]
rs41270080	1.00[ASN][1000 genomes]
rs45586932	1.00[ASN][1000 genomes]
rs56002954	1.00[ASN][1000 genomes]
rs57599664	1.00[ASN][1000 genomes]
rs57634040	1.00[ASN][1000 genomes]
rs58580399	1.00[ASN][1000 genomes]
rs58873316	1.00[ASN][1000 genomes]
rs59320339	1.00[ASN][1000 genomes]
rs59595954	1.00[ASN][1000 genomes]
rs59902843	1.00[AMR][1000 genomes]
rs60156710	1.00[ASN][1000 genomes]
rs61024208	1.00[ASN][1000 genomes]
rs61188051	1.00[ASN][1000 genomes]
rs61731466	1.00[ASN][1000 genomes]
rs6457849	1.00[ASN][1000 genomes]
rs6907851	1.00[AMR][1000 genomes]
rs73404016	1.00[AMR][1000 genomes]
rs73404033	1.00[AMR][1000 genomes]
rs73421726	1.00[ASN][1000 genomes]
rs73729766	1.00[ASN][1000 genomes]
rs73746473	1.00[ASN][1000 genomes]
rs73746478	1.00[ASN][1000 genomes]
rs73746481	1.00[ASN][1000 genomes]
rs73746488	1.00[ASN][1000 genomes]
rs73746490	1.00[ASN][1000 genomes]
rs73746491	1.00[ASN][1000 genomes]
rs73746493	1.00[ASN][1000 genomes]
rs73746494	1.00[ASN][1000 genomes]
rs73746495	1.00[ASN][1000 genomes]
rs73746498	1.00[ASN][1000 genomes]
rs73746499	1.00[ASN][1000 genomes]
rs73748203	1.00[ASN][1000 genomes]
rs73748204	1.00[ASN][1000 genomes]
rs73748205	1.00[ASN][1000 genomes]
rs73748206	1.00[ASN][1000 genomes]
rs73748209	1.00[ASN][1000 genomes]
rs73748211	1.00[ASN][1000 genomes]
rs7743425	1.00[ASN][1000 genomes]
rs7745231	1.00[ASN][1000 genomes]
rs7747121	1.00[ASN][1000 genomes]
rs7755974	1.00[ASN][1000 genomes]
rs7771722	1.00[ASN][1000 genomes]
rs7775702	1.00[ASN][1000 genomes]
rs7775879	1.00[ASN][1000 genomes]
rs7776232	1.00[ASN][1000 genomes]
rs9767565	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv602924	chr6:35505311-35750299	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv821646	chr6:35604428-35802594	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv885802	chr6:35621781-35787417	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
7	nsv885803	chr6:35621781-35805133	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv885804	chr6:35621781-35809776	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv428143	chr6:35637083-35806504	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
10	nsv885805	chr6:35685955-35779879	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
11	nsv524941	chr6:35734051-35745655	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv525686	chr6:35734051-35750299	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	esv2762585	chr6:35734884-35747108	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35732400-35744200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:35739600-35744000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:35739600-35744200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:35740000-35744000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr6:35740000-35744200	Weak transcription	Primary B cells from cord blood	blood
6	chr6:35740200-35743400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:35743000-35744200	Weak transcription	Right Atrium	heart

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