Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13772110..13774350-chr6:13784237..13786715,2	K562	blood:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1062066	0.85[CHB][hapmap];0.86[CHD][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs3180196	0.80[CEU][hapmap]
rs4715562	0.88[ASN][1000 genomes]
rs4989640	0.91[ASN][1000 genomes]
rs6459094	0.99[ASN][1000 genomes]
rs6459095	0.99[ASN][1000 genomes]
rs66520959	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs66571901	0.94[ASN][1000 genomes]
rs67699103	0.81[ASN][1000 genomes]
rs6904811	0.86[ASN][1000 genomes]
rs6908771	0.93[ASN][1000 genomes]
rs6922822	0.85[CHB][hapmap]
rs6924038	0.88[ASN][1000 genomes]
rs6924799	0.99[ASN][1000 genomes]
rs6926691	0.85[CHB][hapmap]
rs7770141	0.91[ASN][1000 genomes]
rs7772736	0.94[ASN][1000 genomes]
rs9296797	0.92[ASN][1000 genomes]
rs9296798	0.90[ASN][1000 genomes]
rs9296799	0.90[ASN][1000 genomes]
rs9367649	0.91[ASN][1000 genomes]
rs9382520	0.96[ASN][1000 genomes]
rs9396117	0.87[ASN][1000 genomes]
rs9396153	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9464271	0.90[ASN][1000 genomes]
rs9464277	0.93[ASN][1000 genomes]
rs9475362	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1030774	chr6:13736025-13783733	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4715560	CCDC90A	cis	cerebellum	SCAN
rs4715560	CCDC90A	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13766800-13802400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:13768200-13787400	Weak transcription	Fetal Lung	lung
3	chr6:13768800-13790400	Weak transcription	Lung	lung
4	chr6:13769800-13775000	Weak transcription	K562	blood
5	chr6:13770000-13775800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:13770000-13787200	Weak transcription	Fetal Stomach	stomach
7	chr6:13770200-13775400	Weak transcription	Placenta	Placenta
8	chr6:13773200-13790200	Weak transcription	Spleen	Spleen
9	chr6:13774000-13786200	Weak transcription	Fetal Intestine Small	intestine
10	chr6:13774000-13788200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search: