Variant report

Variant	rs67699103
Chromosome Location	chr6:13768423-13768424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1062066	0.84[EUR][1000 genomes]
rs12194076	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12209561	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4715560	0.81[ASN][1000 genomes]
rs4715562	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4989640	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6459094	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6459095	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66571901	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6904811	0.88[EUR][1000 genomes]
rs6924038	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6924799	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7770141	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7772736	0.89[EUR][1000 genomes]
rs9296797	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9296798	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9296799	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9367649	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9382520	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9396117	0.85[ASN][1000 genomes]
rs9396153	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9464271	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9464277	0.90[EUR][1000 genomes]
rs9475361	0.85[AMR][1000 genomes]
rs9475362	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1030774	chr6:13736025-13783733	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13764600-13768600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:13765800-13768800	Enhancers	Fetal Thymus	thymus
3	chr6:13766800-13772800	Weak transcription	Spleen	Spleen
4	chr6:13766800-13802400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:13767200-13768800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:13767400-13768600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
7	chr6:13767600-13768600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr6:13767600-13768800	Enhancers	Lung	lung
9	chr6:13768000-13768600	Enhancers	Fetal Muscle Trunk	muscle
10	chr6:13768000-13768800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr6:13768000-13768800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:13768000-13769600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:13768200-13768600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:13768200-13768600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr6:13768200-13768600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:13768200-13768800	Enhancers	Fetal Heart	heart
17	chr6:13768200-13768800	Enhancers	Fetal Muscle Leg	muscle
18	chr6:13768200-13768800	Enhancers	Right Atrium	heart
19	chr6:13768200-13768800	Enhancers	Right Ventricle	heart
20	chr6:13768200-13768800	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr6:13768200-13768800	Enhancers	Stomach Smooth Muscle	stomach
22	chr6:13768200-13768800	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr6:13768200-13769400	Weak transcription	Placenta	Placenta
24	chr6:13768200-13769800	Weak transcription	Brain Hippocampus Middle	brain
25	chr6:13768200-13771600	Weak transcription	NHLF	lung
26	chr6:13768200-13787400	Weak transcription	Fetal Lung	lung
27	chr6:13768400-13769400	Weak transcription	Fetal Stomach	stomach
28	chr6:13768400-13769400	Weak transcription	K562	blood

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