Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12194076	0.85[AMR][1000 genomes]
rs12209561	0.85[AMR][1000 genomes]
rs4715562	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4989640	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6459094	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6459095	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs66571901	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67699103	0.85[AMR][1000 genomes]
rs6904811	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6924038	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6924799	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7770141	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7772736	0.83[EUR][1000 genomes]
rs9296797	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9296798	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9296799	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9367649	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9382520	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9396153	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9464271	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9464277	0.83[EUR][1000 genomes]
rs9475362	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1030774	chr6:13736025-13783733	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9475361	CCDC90A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13766800-13772800	Weak transcription	Spleen	Spleen
2	chr6:13766800-13802400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:13768000-13769600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:13768200-13769800	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:13768200-13771600	Weak transcription	NHLF	lung
6	chr6:13768200-13787400	Weak transcription	Fetal Lung	lung
7	chr6:13768800-13769800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:13768800-13790400	Weak transcription	Lung	lung
9	chr6:13769400-13770000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:13769400-13770000	Active TSS	Placenta	Placenta

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