Variant report

Variant	rs4718552
Chromosome Location	chr7:66855914-66855915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11971862	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11976226	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12530552	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12530786	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12531602	0.98[ASN][1000 genomes]
rs12532084	0.91[ASN][1000 genomes]
rs12532409	0.93[ASN][1000 genomes]
rs12532437	0.96[ASN][1000 genomes]
rs12532798	0.96[ASN][1000 genomes]
rs12532952	0.91[ASN][1000 genomes]
rs12533323	0.89[ASN][1000 genomes]
rs12534196	0.96[ASN][1000 genomes]
rs12534273	0.96[ASN][1000 genomes]
rs12534602	0.88[ASN][1000 genomes]
rs12535489	0.89[ASN][1000 genomes]
rs12535529	0.93[ASN][1000 genomes]
rs12535715	1.00[ASN][1000 genomes]
rs12537527	0.84[ASN][1000 genomes]
rs12537772	0.88[ASN][1000 genomes]
rs17144955	0.91[ASN][1000 genomes]
rs17145211	1.00[ASN][1000 genomes]
rs17786435	1.00[ASN][1000 genomes]
rs2277021	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs34722608	0.89[ASN][1000 genomes]
rs34737375	0.94[ASN][1000 genomes]
rs41533347	0.84[ASN][1000 genomes]
rs4717374	0.91[ASN][1000 genomes]
rs4717380	1.00[ASN][1000 genomes]
rs4717382	0.91[ASN][1000 genomes]
rs4718526	0.88[ASN][1000 genomes]
rs4718558	0.91[ASN][1000 genomes]
rs56878889	0.89[ASN][1000 genomes]
rs57571548	0.82[ASN][1000 genomes]
rs58757717	0.88[ASN][1000 genomes]
rs59658946	0.82[ASN][1000 genomes]
rs60593769	0.88[ASN][1000 genomes]
rs61511823	0.89[ASN][1000 genomes]
rs61657086	0.89[ASN][1000 genomes]
rs62466401	0.83[ASN][1000 genomes]
rs62466404	0.84[ASN][1000 genomes]
rs62466433	0.83[ASN][1000 genomes]
rs62466442	0.88[ASN][1000 genomes]
rs62466449	0.89[ASN][1000 genomes]
rs62466450	0.89[ASN][1000 genomes]
rs62466451	0.89[ASN][1000 genomes]
rs62467568	0.91[ASN][1000 genomes]
rs62467572	0.89[ASN][1000 genomes]
rs62467573	0.91[ASN][1000 genomes]
rs62467574	0.91[ASN][1000 genomes]
rs62467575	0.91[ASN][1000 genomes]
rs62467578	1.00[ASN][1000 genomes]
rs62467579	1.00[ASN][1000 genomes]
rs62467612	0.83[ASN][1000 genomes]
rs73124053	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
4	nsv1031147	chr7:66811313-66922350	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1025049	chr7:66823977-66906930	Bivalent Enhancer Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv33523	chr7:66855435-66958898	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66853800-66857400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr7:66855000-66858200	Enhancers	Fetal Brain Male	brain
3	chr7:66855400-66856200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr7:66855400-66857800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:66855800-66856200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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