Variant report
| Variant | rs62467612 |
|---|---|
| Chromosome Location | chr7:66874994-66874995 |
| allele | C/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs11971862 | 0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11976226 | 0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12530552 | 0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12531602 | 0.84[ASN][1000 genomes] |
| rs12532409 | 0.80[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12532437 | 0.86[ASN][1000 genomes] |
| rs12532798 | 0.86[ASN][1000 genomes] |
| rs12532952 | 0.91[ASN][1000 genomes] |
| rs12533323 | 0.93[ASN][1000 genomes] |
| rs12534196 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12534273 | 0.86[ASN][1000 genomes] |
| rs12535529 | 0.89[ASN][1000 genomes] |
| rs12535715 | 0.83[ASN][1000 genomes] |
| rs17145211 | 0.83[ASN][1000 genomes] |
| rs17786435 | 0.83[ASN][1000 genomes] |
| rs34722608 | 0.93[ASN][1000 genomes] |
| rs34737375 | 0.84[ASN][1000 genomes] |
| rs4717380 | 0.83[ASN][1000 genomes] |
| rs4717382 | 0.91[ASN][1000 genomes] |
| rs4718552 | 0.83[ASN][1000 genomes] |
| rs4718558 | 0.91[ASN][1000 genomes] |
| rs57571548 | 0.86[ASN][1000 genomes] |
| rs59658946 | 0.86[ASN][1000 genomes] |
| rs61511823 | 0.93[ASN][1000 genomes] |
| rs62467578 | 0.83[ASN][1000 genomes] |
| rs62467579 | 0.83[ASN][1000 genomes] |
| rs73124053 | 0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv888330 | chr7:66502171-66877880 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 39 gene(s) | inside rSNPs | diseases |
| 2 | nsv1031147 | chr7:66811313-66922350 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1025049 | chr7:66823977-66906930 | Bivalent Enhancer Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv33523 | chr7:66855435-66958898 | Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:66872400-66878200 | Weak transcription | H9 Cell Line | embryonic stem cell |
