Variant report

Variant	rs4719674
Chromosome Location	chr7:21804404-21804405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10227357	0.83[CEU][hapmap]
rs10485977	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs10950873	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12531721	0.93[EUR][1000 genomes]
rs12536891	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12539745	0.81[CEU][hapmap];0.90[JPT][hapmap]
rs12700302	0.91[CEU][hapmap]
rs12700303	0.90[JPT][hapmap]
rs7780974	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs7795917	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1016063	chr7:21740433-21808410	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv470177	chr7:21801125-21817048	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21789400-21804800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:21795000-21805200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:21796600-21810000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:21797600-21805000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:21803400-21808000	Enhancers	Fetal Heart	heart
6	chr7:21804000-21805800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:21804000-21808000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr7:21804200-21805200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:21804200-21805200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:21804200-21805600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr7:21804200-21805600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:21804400-21805000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:21804400-21805200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr7:21804400-21805400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links