Variant report

Variant	rs7780974
Chromosome Location	chr7:21798233-21798234
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10950873	0.82[ASN][1000 genomes]
rs1109806	0.91[CEU][hapmap]
rs12536891	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs12700302	0.87[LWK][hapmap]
rs17145244	0.82[JPT][hapmap]
rs2072217	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2270021	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4355679	0.91[CEU][hapmap];0.89[GIH][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4449698	0.91[CEU][hapmap];0.91[GIH][hapmap];0.88[MEX][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4719674	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs6971593	0.86[CEU][hapmap]
rs7795917	0.82[ASN][1000 genomes]
rs9639393	0.95[CEU][hapmap];0.88[CHB][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9639394	0.95[CEU][hapmap];0.88[CHB][hapmap]
rs9639396	0.87[GIH][hapmap];0.82[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1016063	chr7:21740433-21808410	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21789400-21804800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:21795000-21804200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:21795000-21805200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:21796600-21810000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr7:21797200-21798600	Enhancers	HepG2	liver
6	chr7:21797600-21798600	Enhancers	Fetal Heart	heart
7	chr7:21797600-21804400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:21797600-21805000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr7:21797800-21798800	Enhancers	Stomach Mucosa	stomach
10	chr7:21798000-21798800	Enhancers	Liver	Liver
11	chr7:21798200-21799600	Weak transcription	Gastric	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links