Variant report
| Variant | rs9639394 |
|---|---|
| Chromosome Location | chr7:21779506-21779507 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
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| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs1109806 | 0.95[CEU][hapmap] |
| rs12700301 | 0.87[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs13234204 | 0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs2072217 | 0.85[EUR][1000 genomes] |
| rs2270021 | 0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2906684 | 0.82[CEU][hapmap] |
| rs2906685 | 0.80[CEU][hapmap] |
| rs2906686 | 0.82[CEU][hapmap] |
| rs2965364 | 0.82[CEU][hapmap] |
| rs4355679 | 0.95[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs4449698 | 0.95[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs6461597 | 0.81[CEU][hapmap] |
| rs6971593 | 0.90[CEU][hapmap] |
| rs757962 | 0.86[EUR][1000 genomes] |
| rs7780974 | 0.95[CEU][hapmap];0.88[CHB][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs9639393 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9639396 | 0.81[CEU][hapmap];0.82[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018133 | chr7:21740118-22055283 | Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv1016063 | chr7:21740433-21808410 | Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
