Variant report

Variant	rs2906686
Chromosome Location	chr7:21779084-21779085
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13234204	0.90[CEU][hapmap]
rs2906684	1.00[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap]
rs2906685	1.00[CEU][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap]
rs2906687	0.95[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2965360	0.84[AMR][1000 genomes]
rs2965364	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap]
rs6461597	0.80[CEU][hapmap]
rs6971593	0.80[CEU][hapmap]
rs9639393	0.81[CEU][hapmap]
rs9639394	0.82[CEU][hapmap]
rs9639395	0.95[CEU][hapmap];0.86[JPT][hapmap];0.88[YRI][hapmap]
rs9639396	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1016063	chr7:21740433-21808410	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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