Variant report

Variant	rs2906685
Chromosome Location	chr7:21778746-21778747
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1029598	0.84[CHB][hapmap]
rs1109806	0.93[ASW][hapmap];0.93[LWK][hapmap];0.82[MKK][hapmap];0.89[YRI][hapmap]
rs13234204	0.88[CEU][hapmap]
rs2906684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2906686	1.00[CEU][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap]
rs2906687	0.86[ASW][hapmap];0.94[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.80[LWK][hapmap];0.96[MEX][hapmap];0.91[MKK][hapmap];0.94[TSI][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2965360	0.84[AMR][1000 genomes]
rs2965364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2965365	0.81[AFR][1000 genomes]
rs6461597	0.83[MEX][hapmap]
rs933354	0.84[CHB][hapmap]
rs9639393	0.80[CEU][hapmap]
rs9639394	0.80[CEU][hapmap]
rs9639395	0.86[ASW][hapmap];0.94[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.94[TSI][hapmap];0.84[YRI][hapmap]
rs9639396	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1016063	chr7:21740433-21808410	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2906685	SP8	cis	parietal	SCAN
rs2906685	TOMM7	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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