Variant report

Variant	rs1109806
Chromosome Location	chr7:21778449-21778450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17145240	0.84[CHB][hapmap]
rs2072217	0.88[EUR][1000 genomes]
rs2270021	0.81[EUR][1000 genomes]
rs2906684	0.88[YRI][hapmap]
rs2906685	0.93[ASW][hapmap];0.93[LWK][hapmap];0.82[MKK][hapmap];0.89[YRI][hapmap]
rs2965360	0.81[AMR][1000 genomes]
rs2965365	0.83[CHB][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4355679	1.00[CEU][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs4449698	1.00[CEU][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes]
rs6461597	0.85[CEU][hapmap]
rs6971593	0.95[CEU][hapmap];0.87[TSI][hapmap]
rs757962	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7780974	0.91[CEU][hapmap]
rs9639393	0.95[CEU][hapmap];0.86[JPT][hapmap];0.81[TSI][hapmap]
rs9639394	0.95[CEU][hapmap]
rs9639395	0.90[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1016063	chr7:21740433-21808410	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1109806	STK31	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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