Variant report

Variant	rs6971593
Chromosome Location	chr7:21777639-21777640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1109806	0.95[CEU][hapmap];0.87[TSI][hapmap]
rs2072217	0.93[EUR][1000 genomes]
rs2270021	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2906686	0.80[CEU][hapmap]
rs2965364	0.80[CEU][hapmap]
rs2965365	0.84[EUR][1000 genomes]
rs4355679	0.95[CEU][hapmap];0.82[CHD][hapmap];0.87[MEX][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes]
rs4449698	0.95[CEU][hapmap];0.82[CHD][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap];0.91[EUR][1000 genomes]
rs6461597	0.90[CEU][hapmap]
rs7780974	0.86[CEU][hapmap]
rs9639393	0.90[CEU][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9639394	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1016063	chr7:21740433-21808410	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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