Variant report

Variant	rs9639393
Chromosome Location	chr7:21779278-21779279
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1109806	0.95[CEU][hapmap];0.86[JPT][hapmap];0.81[TSI][hapmap]
rs12700301	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13234204	0.84[CEU][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17145244	0.84[JPT][hapmap]
rs2072217	0.86[EUR][1000 genomes]
rs2270021	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2906684	0.81[CEU][hapmap]
rs2906685	0.80[CEU][hapmap]
rs2906686	0.81[CEU][hapmap]
rs2965364	0.81[CEU][hapmap]
rs4355679	0.95[CEU][hapmap];0.83[GIH][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs4449698	0.95[CEU][hapmap];0.85[GIH][hapmap];0.88[MEX][hapmap];0.84[EUR][1000 genomes]
rs6461597	0.81[CEU][hapmap];0.83[GIH][hapmap]
rs6971593	0.90[CEU][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap]
rs757962	0.84[EUR][1000 genomes]
rs7780974	0.95[CEU][hapmap];0.88[CHB][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9639394	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap]
rs9639396	0.81[CEU][hapmap];0.84[GIH][hapmap];0.91[MEX][hapmap];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1016063	chr7:21740433-21808410	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21779200-21779400	Weak transcription	Aorta	Aorta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links