Variant report

Variant	rs9639396
Chromosome Location	chr7:21780930-21780931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12700301	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13234204	0.94[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2906684	0.81[CEU][hapmap]
rs2906685	0.80[CEU][hapmap]
rs2906686	0.81[CEU][hapmap]
rs2906687	0.86[CEU][hapmap]
rs2965360	0.80[EUR][1000 genomes]
rs2965364	0.81[CEU][hapmap]
rs4355679	0.81[GIH][hapmap];0.83[MEX][hapmap]
rs4449698	0.83[GIH][hapmap]
rs7780974	0.87[GIH][hapmap];0.82[MEX][hapmap]
rs9639393	0.81[CEU][hapmap];0.84[GIH][hapmap];0.91[MEX][hapmap];0.83[AMR][1000 genomes]
rs9639394	0.81[CEU][hapmap]
rs9639395	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1016063	chr7:21740433-21808410	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21779800-21781000	Enhancers	Brain Substantia Nigra	brain
2	chr7:21780800-21781400	Active TSS	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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