Variant report

Variant	rs4355679
Chromosome Location	chr7:21789442-21789443
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1109806	1.00[CEU][hapmap];0.89[TSI][hapmap]
rs17145244	0.92[JPT][hapmap]
rs2072217	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2270021	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2965365	0.85[EUR][1000 genomes]
rs4449698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6461597	0.85[CEU][hapmap]
rs6971593	0.95[CEU][hapmap];0.82[CHD][hapmap];0.87[MEX][hapmap];0.92[TSI][hapmap]
rs7780974	0.91[CEU][hapmap];0.89[GIH][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9639393	0.95[CEU][hapmap];0.83[GIH][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs9639394	0.95[CEU][hapmap]
rs9639396	0.81[GIH][hapmap];0.83[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1016063	chr7:21740433-21808410	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4355679	STK31	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21782600-21798000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:21788800-21789600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr7:21789000-21789600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr7:21789000-21789600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr7:21789400-21794200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:21789400-21794200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr7:21789400-21794400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr7:21789400-21794400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr7:21789400-21794600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:21789400-21804800	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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