Variant report

Variant	rs4729427
Chromosome Location	chr7:97906855-97906856
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:97854372..97856436-chr7:97905266..97907266,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10245235	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10953249	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10953251	1.00[AMR][1000 genomes]
rs10953252	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10953253	1.00[AMR][1000 genomes]
rs13235259	0.83[AFR][1000 genomes]
rs13244727	0.80[AFR][1000 genomes]
rs13244882	0.83[AFR][1000 genomes]
rs13247283	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4562234	1.00[AMR][1000 genomes]
rs4604367	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4729425	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4729428	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6970789	1.00[AMR][1000 genomes]
rs7778082	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7791025	0.86[AFR][1000 genomes]
rs7803433	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3500384	chr7:97527787-98015382	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	esv3500386	chr7:97527787-98015382	Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1017481	chr7:97597641-98041043	Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv539031	chr7:97597641-98041043	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv1019531	chr7:97653880-98034129	Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv539032	chr7:97653880-98034129	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv1033029	chr7:97773232-98017992	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv539033	chr7:97773232-98017992	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv888760	chr7:97816327-97965016	Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	nsv831067	chr7:97860169-98065528	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
12	nsv1026477	chr7:97869446-98034129	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
13	esv1802449	chr7:97900191-97929668	Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:97886600-97909800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr7:97886800-97909200	Weak transcription	Brain Substantia Nigra	brain
3	chr7:97886800-97910000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr7:97887200-97910000	Weak transcription	Right Ventricle	heart
5	chr7:97887400-97908000	Weak transcription	Gastric	stomach
6	chr7:97887400-97910000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr7:97887600-97909600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr7:97888000-97908000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr7:97891000-97909800	Weak transcription	Brain Hippocampus Middle	brain
10	chr7:97891000-97909800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr7:97891200-97909600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:97891200-97909800	Weak transcription	Aorta	Aorta
13	chr7:97891200-97909800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr7:97891400-97909600	Weak transcription	Primary B cells from cord blood	blood
15	chr7:97891400-97909800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr7:97892000-97909600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr7:97892000-97909800	Weak transcription	Spleen	Spleen
18	chr7:97892600-97909600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr7:97893400-97909200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr7:97895600-97907800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr7:97895600-97910000	Weak transcription	HSMM	muscle
22	chr7:97895800-97909800	Weak transcription	Primary T cells from cord blood	blood
23	chr7:97895800-97910000	Weak transcription	Osteobl	bone
24	chr7:97896800-97908000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr7:97896800-97908200	Weak transcription	HSMMtube	muscle
26	chr7:97896800-97909800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr7:97897000-97907600	Weak transcription	Fetal Muscle Leg	muscle
28	chr7:97897000-97909800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr7:97897200-97907600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr7:97900000-97907800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr7:97903000-97907000	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr7:97903200-97909600	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr7:97904600-97909600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr7:97906000-97908600	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr7:97906000-97910000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr7:97906000-97910000	Weak transcription	NHDF-Ad	bronchial
37	chr7:97906200-97907800	Weak transcription	Colonic Mucosa	Colon
38	chr7:97906200-97907800	Weak transcription	Placenta	Placenta
39	chr7:97906200-97907800	Weak transcription	A549	lung
40	chr7:97906200-97907800	Weak transcription	HepG2	liver
41	chr7:97906200-97908200	Weak transcription	Liver	Liver
42	chr7:97906200-97908200	Weak transcription	Fetal Intestine Small	intestine
43	chr7:97906200-97909800	Weak transcription	Stomach Smooth Muscle	stomach
44	chr7:97906200-97910000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr7:97906200-97910000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr7:97906200-97910000	Weak transcription	Fetal Lung	lung
47	chr7:97906200-97910000	Weak transcription	Ovary	ovary
48	chr7:97906400-97907600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr7:97906400-97907800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr7:97906400-97907800	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links