Variant report

Variant	rs4731470
Chromosome Location	chr7:128158910-128158911
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1014506	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1053124	0.82[CHD][hapmap];0.91[JPT][hapmap]
rs1056633	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs17152072	1.00[CEU][hapmap];0.93[GIH][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs17162583	0.95[JPT][hapmap]
rs1864233	1.00[CEU][hapmap];0.86[AMR][1000 genomes]
rs2288553	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs28364722	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs3807127	1.00[CEU][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap]
rs4552841	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4728109	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4728127	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4731447	1.00[CEU][hapmap];0.93[GIH][hapmap];0.84[MEX][hapmap]
rs4731457	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4731458	1.00[CEU][hapmap];0.91[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4731471	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4731495	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs5018787	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56734454	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57271522	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57503656	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61192768	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs61556684	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6952886	0.86[AMR][1000 genomes]
rs72624969	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794896	chr7:128142170-128170380	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4731470	IMPDH1	cis	multi-tissue	Pritchard

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128117800-128162800	Weak transcription	Pancreas	Pancrea
2	chr7:128117800-128163400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:128142200-128163200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr7:128143800-128160000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:128153200-128163200	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links