Variant report

Variant	rs56734454
Chromosome Location	chr7:128174522-128174523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:128139215..128142117-chr7:128174144..128176717,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1014506	0.80[AMR][1000 genomes]
rs1056633	0.82[AMR][1000 genomes]
rs17152072	0.80[AMR][1000 genomes]
rs2288553	0.80[AMR][1000 genomes]
rs28364722	0.80[AMR][1000 genomes]
rs4552841	0.92[AMR][1000 genomes]
rs4728109	0.80[AMR][1000 genomes]
rs4728127	0.89[EUR][1000 genomes]
rs4731457	0.82[AMR][1000 genomes]
rs4731458	0.82[AMR][1000 genomes]
rs4731470	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4731471	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4731495	0.87[EUR][1000 genomes]
rs5018787	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57271522	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57503656	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61192768	0.82[AMR][1000 genomes]
rs61556684	0.82[AMR][1000 genomes]
rs72624969	0.80[AMR][1000 genomes]
rs9801062	0.80[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128172600-128174600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:128172600-128178600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:128172600-128178800	Weak transcription	Esophagus	oesophagus
4	chr7:128172600-128179200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr7:128172600-128179400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:128172600-128179600	Weak transcription	Lung	lung
7	chr7:128172600-128184800	Weak transcription	Spleen	Spleen
8	chr7:128172600-128187600	Weak transcription	Pancreas	Pancrea
9	chr7:128172600-128189800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr7:128172600-128191000	Weak transcription	Ovary	ovary
11	chr7:128172600-128191200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:128172600-128193400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr7:128172600-128210800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:128172600-128214800	Weak transcription	Gastric	stomach
15	chr7:128172800-128175400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:128172800-128175400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr7:128172800-128175400	Weak transcription	Placenta	Placenta
18	chr7:128172800-128239800	Weak transcription	Small Intestine	intestine
19	chr7:128173000-128174600	Weak transcription	Fetal Stomach	stomach
20	chr7:128173000-128174800	Weak transcription	Left Ventricle	heart
21	chr7:128173000-128178800	Weak transcription	Stomach Mucosa	stomach
22	chr7:128173000-128188000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr7:128173000-128190400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr7:128173000-128190800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr7:128173000-128231800	Weak transcription	Colonic Mucosa	Colon
26	chr7:128173000-128231800	Weak transcription	Fetal Kidney	kidney
27	chr7:128173200-128175200	Weak transcription	Primary B cells from peripheral blood	blood
28	chr7:128173200-128177200	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr7:128173200-128183200	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr7:128173400-128188200	Weak transcription	Fetal Brain Male	brain
31	chr7:128173600-128174600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr7:128173600-128174600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
33	chr7:128173600-128174600	Weak transcription	Fetal Intestine Small	intestine
34	chr7:128173600-128175800	Strong transcription	H1 Cell Line	embryonic stem cell
35	chr7:128173600-128175800	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr7:128173600-128178200	Weak transcription	Fetal Muscle Leg	muscle
37	chr7:128173600-128181200	Weak transcription	Fetal Intestine Large	intestine
38	chr7:128173600-128187200	Weak transcription	Brain Anterior Caudate	brain
39	chr7:128173600-128201000	Weak transcription	Psoas Muscle	Psoas
40	chr7:128173600-128214800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr7:128173800-128174800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr7:128173800-128175400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr7:128173800-128175400	Genic enhancers	Dnd41	blood
44	chr7:128173800-128175800	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr7:128173800-128175800	Strong transcription	Fetal Thymus	thymus
46	chr7:128173800-128176000	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr7:128173800-128176000	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr7:128173800-128176200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr7:128173800-128176400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr7:128173800-128177000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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