Variant report

Variant	rs4731620
Chromosome Location	chr7:129373184-129373185
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129372539..129374355-chr7:129379814..129381363,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10239118	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10244147	0.82[CHB][hapmap];0.83[AFR][1000 genomes]
rs10244241	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10267039	0.84[AFR][1000 genomes]
rs10500120	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13246612	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2402970	0.84[AFR][1000 genomes]
rs35268174	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36094093	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62489304	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129315600-129373600	Weak transcription	Psoas Muscle	Psoas
2	chr7:129319000-129380000	Weak transcription	NHDF-Ad	bronchial
3	chr7:129339200-129381800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr7:129343200-129379600	Weak transcription	Stomach Mucosa	stomach
5	chr7:129348200-129375600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr7:129348200-129392000	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr7:129348600-129375200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:129348600-129375800	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr7:129351600-129394800	Weak transcription	Hela-S3	cervix
10	chr7:129355200-129380600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:129357000-129392400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr7:129357400-129378400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:129357800-129374200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr7:129358400-129373800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr7:129358800-129376800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr7:129360400-129373800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr7:129360600-129394800	Weak transcription	Small Intestine	intestine
18	chr7:129361800-129392400	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr7:129362200-129374800	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr7:129362200-129375000	Strong transcription	Primary T cells from cord blood	blood
21	chr7:129362200-129376000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:129362200-129379000	Strong transcription	Placenta	Placenta
23	chr7:129362200-129380600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr7:129362200-129381200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr7:129362200-129387800	Strong transcription	Liver	Liver
26	chr7:129362400-129375200	Strong transcription	Primary B cells from peripheral blood	blood
27	chr7:129364200-129397600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr7:129364400-129375800	Strong transcription	Thymus	Thymus
29	chr7:129365200-129388400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr7:129366600-129375600	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr7:129366800-129375000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr7:129366800-129399400	Weak transcription	Fetal Kidney	kidney
33	chr7:129367200-129374200	Weak transcription	Esophagus	oesophagus
34	chr7:129367600-129379200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr7:129367800-129374200	Weak transcription	Colonic Mucosa	Colon
36	chr7:129367800-129379400	Weak transcription	Pancreas	Pancrea
37	chr7:129368000-129374000	Weak transcription	Brain Angular Gyrus	brain
38	chr7:129368200-129373600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr7:129368200-129378400	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr7:129368600-129374200	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr7:129369000-129375200	Strong transcription	Fetal Intestine Large	intestine
42	chr7:129369200-129380600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:129369400-129374200	Weak transcription	Aorta	Aorta
44	chr7:129369400-129378200	Weak transcription	Colon Smooth Muscle	Colon
45	chr7:129369400-129378600	Weak transcription	Right Ventricle	heart
46	chr7:129369400-129379400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr7:129369400-129379600	Weak transcription	Right Atrium	heart
48	chr7:129369600-129373800	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr7:129369600-129374000	Weak transcription	Brain Germinal Matrix	brain
50	chr7:129369600-129374000	Weak transcription	Placenta Amnion	Placenta Amnion

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