Variant report

Variant	rs62489304
Chromosome Location	chr7:129361698-129361699
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129354570..129358914-chr7:129360217..129362870,6	K562	blood:
2	chr7:129358443..129361944-chr7:129389455..129392209,3	K562	blood:
3	chr7:129357651..129362499-chr7:129363567..129368340,4	MCF-7	breast:
4	chr7:129354570..129356381-chr7:129360399..129362297,3	K562	blood:
5	chr7:129361298..129364140-chr7:129418293..129421008,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10239118	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10244147	0.87[AFR][1000 genomes]
rs10244241	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10267039	0.90[AFR][1000 genomes]
rs10500120	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13246612	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2402970	0.90[AFR][1000 genomes]
rs35268174	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36094093	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4731620	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6978860	0.85[AFR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129315600-129373600	Weak transcription	Psoas Muscle	Psoas
2	chr7:129319000-129380000	Weak transcription	NHDF-Ad	bronchial
3	chr7:129328000-129369000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:129339200-129381800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr7:129342800-129367000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:129343200-129379600	Weak transcription	Stomach Mucosa	stomach
7	chr7:129346800-129372400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:129348200-129375600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr7:129348200-129392000	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr7:129348400-129372400	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr7:129348400-129372400	Strong transcription	Dnd41	blood
12	chr7:129348600-129372400	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr7:129348600-129372600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr7:129348600-129375200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:129348600-129375800	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr7:129351600-129394800	Weak transcription	Hela-S3	cervix
17	chr7:129352600-129367000	Weak transcription	Colonic Mucosa	Colon
18	chr7:129352600-129371200	Weak transcription	HMEC	breast
19	chr7:129352800-129363800	Weak transcription	HUVEC	blood vessel
20	chr7:129353800-129367000	Weak transcription	Gastric	stomach
21	chr7:129354800-129368400	Weak transcription	Fetal Heart	heart
22	chr7:129355000-129364200	Weak transcription	HSMMtube	muscle
23	chr7:129355200-129380600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr7:129357000-129392400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr7:129357200-129363800	Weak transcription	Osteobl	bone
26	chr7:129357400-129378400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr7:129357600-129362200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr7:129357600-129367000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr7:129357600-129367000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:129357800-129364000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr7:129357800-129371400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr7:129357800-129374200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr7:129358000-129371200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr7:129358200-129362200	Weak transcription	NHEK	skin
35	chr7:129358200-129362400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr7:129358200-129371800	Weak transcription	NH-A	brain
37	chr7:129358400-129363200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr7:129358400-129367000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr7:129358400-129367000	Weak transcription	Pancreas	Pancrea
40	chr7:129358400-129368600	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr7:129358400-129373800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr7:129358800-129362400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr7:129358800-129363600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr7:129358800-129366200	Weak transcription	Fetal Brain Male	brain
45	chr7:129358800-129371400	Weak transcription	NHLF	lung
46	chr7:129358800-129376800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr7:129359800-129362200	Weak transcription	HSMM	muscle
48	chr7:129359800-129367000	Weak transcription	Esophagus	oesophagus
49	chr7:129360000-129363600	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr7:129360000-129367000	Weak transcription	H9 Cell Line	embryonic stem cell

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