Variant report

Variant	rs473206
Chromosome Location	chr11:86871694-86871695
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10898622	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12280110	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs169972	0.88[CEU][hapmap];0.92[JPT][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1791446	0.84[JPT][hapmap]
rs2048973	0.87[JPT][hapmap]
rs2124581	0.85[CHB][hapmap]
rs2130154	0.90[CHB][hapmap]
rs214740	0.85[ASW][hapmap];0.88[CEU][hapmap];0.93[JPT][hapmap];0.89[LWK][hapmap];0.81[MKK][hapmap];0.86[TSI][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2445541	0.85[CHB][hapmap]
rs2445542	0.85[CHB][hapmap]
rs2445559	0.85[CHB][hapmap]
rs2445566	0.85[CHB][hapmap]
rs2445567	0.83[CHB][hapmap]
rs2445569	0.85[CHB][hapmap]
rs2445576	0.89[CHB][hapmap]
rs2445579	0.85[CHB][hapmap]
rs2451053	0.87[JPT][hapmap]
rs2509560	0.85[JPT][hapmap]
rs2511095	0.81[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2512325	0.89[CHB][hapmap]
rs2512327	0.85[CHB][hapmap]
rs2512336	0.81[ASN][1000 genomes]
rs2512344	0.85[JPT][hapmap]
rs2512350	0.87[JPT][hapmap]
rs2512352	0.85[CHB][hapmap]
rs2512353	0.85[CHB][hapmap]
rs2512380	0.85[CHB][hapmap]
rs2512381	0.80[CHB][hapmap]
rs2512382	0.85[CHB][hapmap]
rs2512385	0.85[CHB][hapmap]
rs2512386	0.85[CHB][hapmap]
rs2512390	0.85[CHB][hapmap]
rs2512488	0.85[CHB][hapmap]
rs2512490	0.87[JPT][hapmap]
rs2512501	0.85[CHB][hapmap]
rs2513207	0.85[CHB][hapmap]
rs2513226	0.85[CHB][hapmap]
rs301574	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs301575	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs301576	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs301586	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs301589	0.88[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs301593	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs301595	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs301596	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs476832	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs477062	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs482288	0.88[CEU][hapmap];0.80[CHB][hapmap];0.92[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs482339	0.87[JPT][hapmap]
rs483373	0.87[JPT][hapmap]
rs491895	0.87[JPT][hapmap]
rs492211	0.87[JPT][hapmap]
rs494698	0.87[JPT][hapmap]
rs495668	0.87[JPT][hapmap]
rs496671	0.87[JPT][hapmap]
rs502580	0.86[JPT][hapmap]
rs5028348	0.85[JPT][hapmap]
rs520755	0.87[JPT][hapmap]
rs522211	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs525139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs538494	0.89[CHB][hapmap]
rs541998	0.87[JPT][hapmap]
rs546229	0.87[JPT][hapmap]
rs547867	0.87[JPT][hapmap]
rs549932	0.87[JPT][hapmap]
rs550988	0.86[JPT][hapmap]
rs552521	0.87[JPT][hapmap]
rs556139	0.87[JPT][hapmap]
rs564877	0.85[JPT][hapmap]
rs565869	0.85[JPT][hapmap]
rs565938	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs566046	0.87[JPT][hapmap]
rs573889	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs576582	0.87[JPT][hapmap]
rs576679	0.87[JPT][hapmap]
rs580120	0.87[JPT][hapmap]
rs583334	0.87[JPT][hapmap]
rs597319	0.86[JPT][hapmap]
rs597344	0.87[JPT][hapmap]
rs597406	0.87[JPT][hapmap]
rs603140	0.87[JPT][hapmap]
rs604035	0.87[JPT][hapmap]
rs606284	0.87[JPT][hapmap]
rs606299	0.87[JPT][hapmap]
rs607616	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs608870	0.85[JPT][hapmap]
rs608966	0.87[JPT][hapmap]
rs610228	0.87[JPT][hapmap]
rs611523	0.87[JPT][hapmap]
rs618926	0.87[JPT][hapmap]
rs623606	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs625554	0.87[JPT][hapmap]
rs628447	0.87[JPT][hapmap]
rs634277	0.85[JPT][hapmap]
rs652171	0.87[JPT][hapmap]
rs655050	0.87[JPT][hapmap]
rs655907	0.87[JPT][hapmap]
rs660246	0.87[JPT][hapmap]
rs664398	0.87[JPT][hapmap]
rs687244	0.87[JPT][hapmap]
rs687651	0.87[JPT][hapmap]
rs692857	0.85[JPT][hapmap]
rs7949665	0.87[JPT][hapmap]
rs989689	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037042	chr11:86586876-86978492	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv541119	chr11:86586876-86978492	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv898058	chr11:86754948-86889284	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv898059	chr11:86754948-86949369	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	esv1844274	chr11:86776992-86872908	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1045057	chr11:86794670-87033779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv541121	chr11:86794670-87033779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv468777	chr11:86794856-86985581	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv555707	chr11:86794856-86985581	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv898060	chr11:86822077-86912633	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv420	chr11:86845328-86890111	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv898061	chr11:86850483-86944982	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv468778	chr11:86850483-86974576	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv555708	chr11:86850483-86974576	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv898062	chr11:86864277-86902079	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv898063	chr11:86864277-86944982	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv898064	chr11:86864277-87013438	Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86809000-86876000	Weak transcription	Left Ventricle	heart
2	chr11:86836800-86877200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:86851200-86872600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:86867000-86888600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:86867600-86884200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:86868200-86881800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:86868200-86884200	Weak transcription	HepG2	liver
8	chr11:86870400-86884600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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