Variant report

Variant	rs4732185
Chromosome Location	chr7:135899512-135899513
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10225343	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10264252	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10270360	1.00[ASW][hapmap];0.83[CEU][hapmap];0.87[TSI][hapmap]
rs10278072	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10278434	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12533021	0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12539683	0.93[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs17243535	0.90[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs17243556	0.87[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs1820462	0.83[CEU][hapmap]
rs2081598	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2349457	0.82[AFR][1000 genomes]
rs4732179	0.93[JPT][hapmap]
rs4732183	0.93[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4732184	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4732186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6950690	0.93[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6975411	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7779031	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889236	chr7:135884571-135943264	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1034145	chr7:135893502-135986088	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv524143	chr7:135896926-135904504	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv1033206	chr7:135899512-135978595	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:135895800-135900800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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