Variant report

Variant	rs4734388
Chromosome Location	chr8:99193958-99193959
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:99193362..99195766-chr8:99196470..99198946,2	MCF-7	breast:
2	chr8:99192481..99195467-chr8:99200110..99202473,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10095790	0.84[ASN][1000 genomes]
rs10095887	0.84[ASN][1000 genomes]
rs10100633	0.84[ASN][1000 genomes]
rs1109159	0.85[ASN][1000 genomes]
rs11987536	0.83[ASN][1000 genomes]
rs12677283	0.84[ASN][1000 genomes]
rs12680361	0.84[ASN][1000 genomes]
rs12680980	0.84[ASN][1000 genomes]
rs16896763	0.84[ASN][1000 genomes]
rs16896768	0.84[ASN][1000 genomes]
rs2877460	0.83[ASN][1000 genomes]
rs3779721	0.84[ASN][1000 genomes]
rs4734387	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4734389	0.83[ASN][1000 genomes]
rs4734390	0.83[ASN][1000 genomes]
rs4735535	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4735539	0.84[ASN][1000 genomes]
rs55908268	0.84[ASN][1000 genomes]
rs56906975	0.84[ASN][1000 genomes]
rs60414868	0.85[ASN][1000 genomes]
rs72680644	0.85[ASN][1000 genomes]
rs896417	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv831405	chr8:99095239-99260934	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv891216	chr8:99153160-99209248	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv14716	chr8:99169690-99199971	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99190800-99194000	Weak transcription	Lung	lung
2	chr8:99191400-99196400	Weak transcription	Right Ventricle	heart
3	chr8:99191600-99196600	Weak transcription	Left Ventricle	heart
4	chr8:99191600-99197600	Weak transcription	Esophagus	oesophagus
5	chr8:99191600-99203000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:99191600-99243800	Weak transcription	Spleen	Spleen
7	chr8:99192000-99196200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:99192200-99196200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:99192200-99196400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr8:99192200-99196600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:99192200-99196600	Weak transcription	Right Atrium	heart
12	chr8:99192200-99201000	Weak transcription	Fetal Heart	heart
13	chr8:99192200-99205800	Weak transcription	Fetal Intestine Small	intestine
14	chr8:99192200-99210600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr8:99192200-99214400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr8:99192400-99196200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr8:99192400-99196200	Weak transcription	Osteobl	bone
18	chr8:99192400-99196800	Weak transcription	Stomach Smooth Muscle	stomach
19	chr8:99192600-99194000	Weak transcription	Ovary	ovary
20	chr8:99192600-99194800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr8:99192600-99195800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr8:99192600-99196000	Weak transcription	Fetal Muscle Leg	muscle
23	chr8:99192600-99196200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr8:99192600-99196200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr8:99192600-99196200	Weak transcription	NHDF-Ad	bronchial
26	chr8:99192600-99196400	Weak transcription	HSMMtube	muscle
27	chr8:99192600-99197400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr8:99192800-99210400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr8:99193400-99206400	Weak transcription	Pancreas	Pancrea
30	chr8:99193800-99194000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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