Variant report

Variant	rs4734389
Chromosome Location	chr8:99196463-99196464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:99189856..99193042-chr8:99195160..99197940,6	MCF-7	breast:
2	chr8:99194852..99196867-chr8:99305864..99308314,2	MCF-7	breast:
3	chr8:99188577..99190258-chr8:99195594..99198169,2	K562	blood:

Variant related genes	Relation type
ENSG00000104361	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10093356	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10093623	0.95[CEU][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10093678	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10093856	0.95[CEU][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10095790	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10095887	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10100633	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10108460	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1109159	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11987536	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12550682	0.91[JPT][hapmap]
rs12677283	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12680361	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12680980	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13271095	0.91[JPT][hapmap]
rs1542289	0.91[CEU][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16896763	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16896768	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16896802	0.96[CEU][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2331809	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28485842	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2877460	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2877495	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3779721	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4734388	0.83[ASN][1000 genomes]
rs4734390	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4735535	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4735539	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55908268	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56906975	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57644890	0.85[EUR][1000 genomes]
rs60414868	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6468620	0.95[CEU][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6468624	0.81[JPT][hapmap]
rs7009145	0.95[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72680644	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs736191	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs896417	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv831405	chr8:99095239-99260934	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv891216	chr8:99153160-99209248	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv14716	chr8:99169690-99199971	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99191600-99196600	Weak transcription	Left Ventricle	heart
2	chr8:99191600-99197600	Weak transcription	Esophagus	oesophagus
3	chr8:99191600-99203000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:99191600-99243800	Weak transcription	Spleen	Spleen
5	chr8:99192200-99196600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:99192200-99196600	Weak transcription	Right Atrium	heart
7	chr8:99192200-99201000	Weak transcription	Fetal Heart	heart
8	chr8:99192200-99205800	Weak transcription	Fetal Intestine Small	intestine
9	chr8:99192200-99210600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr8:99192200-99214400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr8:99192400-99196800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr8:99192600-99197400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr8:99192800-99210400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:99193400-99206400	Weak transcription	Pancreas	Pancrea
15	chr8:99194000-99196600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr8:99194400-99196600	Weak transcription	Ovary	ovary
17	chr8:99194400-99198000	Weak transcription	Lung	lung
18	chr8:99194800-99216600	Weak transcription	Colonic Mucosa	Colon
19	chr8:99195600-99197800	Enhancers	Fetal Stomach	stomach
20	chr8:99195800-99197800	Enhancers	Fetal Muscle Trunk	muscle
21	chr8:99195800-99198600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr8:99196000-99197000	Enhancers	Fetal Muscle Leg	muscle
23	chr8:99196200-99197000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr8:99196200-99197000	Enhancers	Fetal Lung	lung
25	chr8:99196200-99197200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr8:99196200-99197200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr8:99196200-99197200	Enhancers	Adipose Nuclei	Adipose
28	chr8:99196200-99197400	Enhancers	Aorta	Aorta
29	chr8:99196200-99198000	Enhancers	Osteobl	bone
30	chr8:99196200-99198200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr8:99196200-99198200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr8:99196200-99198200	Enhancers	NHDF-Ad	bronchial
33	chr8:99196200-99198400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr8:99196400-99196800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr8:99196400-99197000	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr8:99196400-99197000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr8:99196400-99197000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr8:99196400-99197000	Enhancers	HSMMtube	muscle
39	chr8:99196400-99197200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr8:99196400-99198200	Enhancers	Right Ventricle	heart
41	chr8:99196400-99204800	Weak transcription	Rectal Mucosa Donor 29	rectum

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