Variant report

Variant	rs736191
Chromosome Location	chr8:99195204-99195205
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10093356	0.83[ASN][1000 genomes]
rs10093623	0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs10093678	0.81[ASN][1000 genomes]
rs10093856	0.81[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs10095790	1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs10095887	1.00[CHB][hapmap];0.98[CHD][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs10100633	1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs1109159	1.00[CHB][hapmap];0.98[CHD][hapmap];0.86[JPT][hapmap];0.80[MEX][hapmap];0.92[ASN][1000 genomes]
rs11987536	0.95[CHB][hapmap];0.98[CHD][hapmap];0.86[JPT][hapmap];0.89[LWK][hapmap];0.96[ASN][1000 genomes]
rs12677283	0.93[ASN][1000 genomes]
rs12680361	0.93[ASN][1000 genomes]
rs12680980	0.93[ASN][1000 genomes]
rs1542289	0.87[ASW][hapmap];0.80[CHB][hapmap];0.80[JPT][hapmap];0.80[YRI][hapmap];0.83[ASN][1000 genomes]
rs16896763	0.93[ASN][1000 genomes]
rs16896768	0.93[ASN][1000 genomes]
rs16896802	0.81[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs2331809	0.83[ASN][1000 genomes]
rs28485842	0.81[ASN][1000 genomes]
rs2877460	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2877495	0.80[ASN][1000 genomes]
rs3779721	1.00[CHB][hapmap];0.98[CHD][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs4734389	0.95[CHB][hapmap];0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs4734390	0.95[ASN][1000 genomes]
rs4735539	0.92[ASN][1000 genomes]
rs55908268	0.93[ASN][1000 genomes]
rs56906975	0.93[ASN][1000 genomes]
rs60414868	0.94[ASN][1000 genomes]
rs6468620	0.81[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs7009145	0.80[CHB][hapmap];0.80[JPT][hapmap];0.83[ASN][1000 genomes]
rs72680644	0.86[ASN][1000 genomes]
rs896417	1.00[CHB][hapmap];0.98[CHD][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv831405	chr8:99095239-99260934	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv891216	chr8:99153160-99209248	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv14716	chr8:99169690-99199971	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99191400-99196400	Weak transcription	Right Ventricle	heart
2	chr8:99191600-99196600	Weak transcription	Left Ventricle	heart
3	chr8:99191600-99197600	Weak transcription	Esophagus	oesophagus
4	chr8:99191600-99203000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:99191600-99243800	Weak transcription	Spleen	Spleen
6	chr8:99192000-99196200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:99192200-99196200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:99192200-99196400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:99192200-99196600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:99192200-99196600	Weak transcription	Right Atrium	heart
11	chr8:99192200-99201000	Weak transcription	Fetal Heart	heart
12	chr8:99192200-99205800	Weak transcription	Fetal Intestine Small	intestine
13	chr8:99192200-99210600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr8:99192200-99214400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr8:99192400-99196200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:99192400-99196200	Weak transcription	Osteobl	bone
17	chr8:99192400-99196800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr8:99192600-99195800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr8:99192600-99196000	Weak transcription	Fetal Muscle Leg	muscle
20	chr8:99192600-99196200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr8:99192600-99196200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr8:99192600-99196200	Weak transcription	NHDF-Ad	bronchial
23	chr8:99192600-99196400	Weak transcription	HSMMtube	muscle
24	chr8:99192600-99197400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr8:99192800-99210400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr8:99193400-99206400	Weak transcription	Pancreas	Pancrea
27	chr8:99194000-99196600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr8:99194400-99196600	Weak transcription	Ovary	ovary
29	chr8:99194400-99198000	Weak transcription	Lung	lung
30	chr8:99194800-99195600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr8:99194800-99196200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr8:99194800-99216600	Weak transcription	Colonic Mucosa	Colon

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