Variant report

Variant	rs4737159
Chromosome Location	chr8:39796413-39796414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11777027	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1808343	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1811283	0.85[EUR][1000 genomes]
rs1861903	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1981789	0.84[EUR][1000 genomes]
rs2340953	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2543041	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2729490	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28631334	0.88[AMR][1000 genomes]
rs4144406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6474198	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6991530	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7000868	0.97[YRI][hapmap]
rs7825461	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7846217	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39771600-39797200	Weak transcription	Right Atrium	heart
2	chr8:39785600-39805800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:39792400-39797400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr8:39793400-39798600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:39794200-39796800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr8:39794400-39797200	Weak transcription	K562	blood
7	chr8:39794400-39797400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr8:39794400-39797400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr8:39794400-39797400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr8:39794400-39801600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:39795400-39796800	Weak transcription	Pancreas	Pancrea
12	chr8:39795400-39797200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr8:39795400-39797200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr8:39795400-39797200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr8:39796400-39796600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:39796400-39796600	Enhancers	Small Intestine	intestine
17	chr8:39796400-39797000	Enhancers	Primary B cells from peripheral blood	blood
18	chr8:39796400-39797000	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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