Variant report

Variant	rs6474198
Chromosome Location	chr8:39804228-39804229
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr8:39804104-39804538	U2OS	brain:	n/a	n/a

Variant related genes	Relation type
IDO2	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11777027	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1808343	0.94[AMR][1000 genomes]
rs1811283	0.81[EUR][1000 genomes]
rs1861903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2340953	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2543041	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2729490	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28631334	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4144406	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4737159	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6991530	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7825461	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7846217	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39785600-39805800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:39796600-39806200	Weak transcription	Small Intestine	intestine
3	chr8:39797800-39805800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr8:39797800-39808400	Weak transcription	Fetal Lung	lung
5	chr8:39797800-39808800	Weak transcription	Left Ventricle	heart
6	chr8:39798000-39805600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr8:39798200-39805600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr8:39798800-39805400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr8:39801200-39805800	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr8:39801600-39804400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr8:39801600-39805400	Weak transcription	Primary B cells from cord blood	blood
12	chr8:39801800-39805400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr8:39801800-39805600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr8:39801800-39805600	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr8:39802000-39805600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr8:39802800-39808800	Weak transcription	Lung	lung
17	chr8:39803000-39805000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr8:39803400-39805000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr8:39803400-39805600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr8:39803400-39809200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr8:39803600-39805600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr8:39804200-39804400	Enhancers	K562	blood

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