Variant report

Variant	rs473720
Chromosome Location	chr6:147824569-147824570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs325113	0.88[AMR][1000 genomes]
rs4896920	0.80[CHB][hapmap]
rs494395	0.93[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs540384	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs607474	0.80[CHB][hapmap]
rs623379	0.87[ASN][1000 genomes]
rs66812182	0.89[ASN][1000 genomes]
rs669830	0.80[CHB][hapmap]
rs73020122	0.87[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs473720	PPIL4	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147821000-147827800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:147824200-147824600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
3	chr6:147824200-147825400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
4	chr6:147824400-147824600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
5	chr6:147824400-147824800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
6	chr6:147824400-147825200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
7	chr6:147824400-147825400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
8	chr6:147824400-147825400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
9	chr6:147824400-147825600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links