Variant report

Variant	rs4737503
Chromosome Location	chr8:55071319-55071320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:55069882..55072720-chr8:55074795..55076480,2	K562	blood:
2	chr8:54932909..54934927-chr8:55070015..55071943,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187735	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10504161	0.90[MEX][hapmap]
rs11985706	0.83[ASN][1000 genomes]
rs11991952	0.90[MEX][hapmap]
rs11993959	0.90[MEX][hapmap]
rs11996919	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12114043	0.85[MEX][hapmap]
rs12679542	0.90[MEX][hapmap]
rs13275258	0.81[ASW][hapmap]
rs16919782	0.90[MEX][hapmap]
rs16919784	0.90[MEX][hapmap]
rs2137955	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271567	0.95[MEX][hapmap]
rs2375695	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34997387	0.81[AMR][1000 genomes]
rs4737487	0.90[MEX][hapmap]
rs4738692	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4738693	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57136957	0.82[ASN][1000 genomes]
rs6473914	0.90[MEX][hapmap]
rs6473915	0.90[MEX][hapmap]
rs66939651	0.82[ASN][1000 genomes]
rs68108832	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7012031	0.90[MEX][hapmap]
rs7834481	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs7842911	0.85[MEX][hapmap]
rs952194	0.90[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023983	chr8:54790309-55145770	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv539623	chr8:54790309-55145770	Bivalent Enhancer Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1026869	chr8:54989732-55089360	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
4	nsv429918	chr8:55069061-55124075	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4737503	TCEA1	cis	brain	seeQTL
rs4737503	MRPL15	cis	lymphoblastoid	seeQTL
rs4737503	TCEA1	cis	lymphoblastoid	seeQTL

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:55061600-55078000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr8:55061600-55078400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:55062200-55078400	Weak transcription	Right Atrium	heart
4	chr8:55063400-55078400	Weak transcription	Ovary	ovary
5	chr8:55064000-55078000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr8:55064600-55078400	Weak transcription	Fetal Muscle Leg	muscle
7	chr8:55064800-55078000	Weak transcription	Fetal Intestine Small	intestine
8	chr8:55067200-55071400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr8:55067200-55078000	Weak transcription	NHLF	lung
10	chr8:55067200-55078200	Weak transcription	Primary B cells from cord blood	blood
11	chr8:55067200-55078200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr8:55067200-55078200	Weak transcription	HSMM	muscle
13	chr8:55067200-55078200	Weak transcription	NHDF-Ad	bronchial
14	chr8:55067200-55078400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr8:55071000-55071600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:55071000-55072000	Enhancers	Placenta	Placenta
17	chr8:55071200-55071800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:55071200-55071800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr8:55071200-55071800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr8:55071200-55072000	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr8:55071200-55072200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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